Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00183 ATGGCGATTTCCATTCCCACCCGGCAGCTATTCATCGACGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCGTCATCAACCCCACTACTGAAGAAACAATCGGATCTATTCCTGCTGCTACTGCTGAAGATGTAGAGTTAGCTGTTGATGCTGCTAGAAAAGCGCTGGCGAGGAATAAAGGCAAAGATTGGCGCTCTGCTTCGGGGGCTGTACGTGCCAAGTATTTGCGTGCTATTGCTGCCAAGATAACAGAGAGGAAATCGGAATTAGCAAAGCTTGAGGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGACGATGTTGCTGGGTGCTTCGATTACTATGCAGATCTTGCTGAAGGATTGGATGCAAAGCAGAAAGCTCCTGTTGATGTTCCCATGGATACATTCAAGAGCTATGTTCTAAAAGAACCTATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTGTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGATGTGCTGCAATTTTGAAGCCATCAGAACTTGCATCTGTCACCTCTTTGGAACTGGCCGAAATATGTAAAGATGTTGGTCTTCCATCTGGAATTTTGAATGTTCTGACAGGATACGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCATGTCGACAAGGTTGCATTTACTGGGAGTAGTGCTACTGGAAGCAAGATTATGGCATCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCCATTGTTGTTTTTGATGATGTTGATCTTGACAAGGCTGCCGAATGGGCAATATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACACGAAAACATTGCTGATGAATTCTTGGATAAGATCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGACTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGCAAGAAGGTGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTATGTGTAAAGACTTTTAGTTCTGAAGATGAAGCTATTGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAACGATTTAGAAAGGTGTGACCGTGTAGCCAAGGCTTTTCAGGCAGGAATTGTGTGGATTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATCAAACGGAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATACTTATCTGACTGTAAAGCAGGTTACTCAATACATATCCGATGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 44.71 MAISIPTRQLFIDGEWREPVLKKRIPVINPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWRSASGAVRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMDDVAGCFDYYADLAEGLDAKQKAPVDVPMDTFKSYVLKEPIGVVGLITPWNYPLLMCAWKVAPALAAGCAAILKPSELASVTSLELAEICKDVGLPSGILNVLTGYGPEAGAPLASHPHVDKVAFTGSSATGSKIMASAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWAIFGCFWTNGQICSATSRLLVHENIADEFLDKIVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSTAEQEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKAFQAGIVWINCSQPCFTQAPWGGIKRSGFGRELGEWGLDTYLTVKQVTQYISDEPWGWYKSPSKL* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1188758 1193952 + CsaV3_1G001830.1 Csa01g00183 514680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00183 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Csa01g00183 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 500 - -
Csa01g00183 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Csa01g00183 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Csa01g00183 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Csa01g00183 503 SUPERFAMILY ALDH-like 4 489 IPR016161 GO:0016491
Csa01g00183 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Csa01g00183 503 CDD ALDH_F10_BADH 27 487 - -
Csa01g00183 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00183 K00130 betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8] - csv:101213657 1013.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00183 Csa-Chr1:1188758 Csa01g02053 Csa-Chr1:17531029 1.01E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g684 . . Bda06g00575 . Bpe12g00577 . . . . . Cma10g00151 . Car10g00142 . . . . . . . . . . . Cla06g01634 Cam06g1817 Cec06g1867 Cco06g1872 Clacu06g1775 Cmu06g1717 Cre06g2537 . . . . . . . . Blo13g00042 Blo15g00282 . . Bpe07g00817 . . Bma08g00185 . Cmo10g00162 . . . . . . Cpe18g00825 . . . . . . . . . . . . . . Lsi06g01516 Csa01g00183 Chy02g02550 Cme02g01936
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02053 . 11 508 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 7.5e-212 733.4
Csa02g00312 . 56 541 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 2.8e-158 555.4
Csa01g00160 . 64 549 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 3.2e-154 542.0
Csa01g00160 . 4 549 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 2.2e-254 874.8
Csa02g00312 . 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 1.8e-248 855.1
Csa01g02053 . 23 508 Aldehyde Dehydrogenase Gene Family AT3G48000 54.9 2.5e-160 562.4
Csa02g00312 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 75.4 3.4e-170 594.7
Csa01g00160 . 4 392 Aldehyde Dehydrogenase Gene Family AT1G23800 74.4 1.7e-166 582.4
Csa01g02053 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 1.5e-101 366.7
Csa04g01789 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 1.8e-179 625.9
Csa04g01789 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.6e-178 622.5
Csa04g01412 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 2.6e-117 419.1
Csa04g00526 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 3.6e-114 408.7
Csa04g00526 . 1 478 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 4.6e-182 634.4
Csa04g01412 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.8 8.4e-160 560.5
Csa06g01146 . 37 542 Aldehyde Dehydrogenase Gene Family AT1G79440 76.9 5.6e-234 807.0
Csa07g00612 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 81.5 1.2e-235 812.8
Csa06g03100 . 197 665 Aldehyde Dehydrogenase Gene Family AT2G14170 63.4 7.1e-177 617.5
Csa01g00183 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 8.1e-251 862.8
Csa01g00183 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.0 1.4e-253 872.1
Csa02g00266 . 1 497 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 2.2e-264 907.9
Csa01g00788 . 21 556 Aldehyde Dehydrogenase Gene Family AT5G62530 77.3 4.5e-258 887.1
Csa06g01741 . 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 74.2 1.9e-270 928.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00183 Csa_Chr01 FPKM 16.748631 19.05718 9.539412 8.65237 0.979919 1.33191 0.953446 4.523566 3.920108 4.815217