Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00183 ATGGCGATTTCCATTCCCACCCGGCAGCTATTCATCGACGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCGTCATCAACCCCACTACTGAAGAAACAATCGGATCTATTCCTGCTGCTACTGCTGAAGATGTAGAGTTAGCTGTTGATGCTGCTAGAAAAGCGCTGGCGAGGAATAAAGGCAAAGATTGGCGCTCTGCTTCGGGGGCTGTACGTGCCAAGTATTTGCGTGCTATTGCTGCCAAGATAACAGAGAGGAAATCGGAATTAGCAAAGCTTGAGGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGACGATGTTGCTGGGTGCTTCGATTACTATGCAGATCTTGCTGAAGGATTGGATGCAAAGCAGAAAGCTCCTGTTGATGTTCCCATGGATACATTCAAGAGCTATGTTCTAAAAGAACCTATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTGTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGATGTGCTGCAATTTTGAAGCCATCAGAACTTGCATCTGTCACCTCTTTGGAACTGGCCGAAATATGTAAAGATGTTGGTCTTCCATCTGGAATTTTGAATGTTCTGACAGGATACGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCATGTCGACAAGGTTGCATTTACTGGGAGTAGTGCTACTGGAAGCAAGATTATGGCATCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCCATTGTTGTTTTTGATGATGTTGATCTTGACAAGGCTGCCGAATGGGCAATATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACACGAAAACATTGCTGATGAATTCTTGGATAAGATCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGACTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGCAAGAAGGTGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTATGTGTAAAGACTTTTAGTTCTGAAGATGAAGCTATTGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAACGATTTAGAAAGGTGTGACCGTGTAGCCAAGGCTTTTCAGGCAGGAATTGTGTGGATTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATCAAACGGAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATACTTATCTGACTGTAAAGCAGGTTACTCAATACATATCCGATGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 44.71 MAISIPTRQLFIDGEWREPVLKKRIPVINPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWRSASGAVRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMDDVAGCFDYYADLAEGLDAKQKAPVDVPMDTFKSYVLKEPIGVVGLITPWNYPLLMCAWKVAPALAAGCAAILKPSELASVTSLELAEICKDVGLPSGILNVLTGYGPEAGAPLASHPHVDKVAFTGSSATGSKIMASAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWAIFGCFWTNGQICSATSRLLVHENIADEFLDKIVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSTAEQEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKAFQAGIVWINCSQPCFTQAPWGGIKRSGFGRELGEWGLDTYLTVKQVTQYISDEPWGWYKSPSKL* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1188758 1193952 + CsaV3_1G001830.1 Csa01g00183 514680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00183 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Csa01g00183 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 500 - -
Csa01g00183 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Csa01g00183 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Csa01g00183 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Csa01g00183 503 SUPERFAMILY ALDH-like 4 489 IPR016161 GO:0016491
Csa01g00183 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Csa01g00183 503 CDD ALDH_F10_BADH 27 487 - -
Csa01g00183 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00183 Csa-Chr1:1188758 Csa01g02053 Csa-Chr1:17531029 1.01E-127 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00183 K00130 - csv:101213657 1013.06