Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00184 ATGGGGAGCACAGAGGAGAAGGTTGTAGCTGTGATCATGGTCGGCGGTCCCACTAAAGGAACTAGATTTCGACCTCTGTCATTGAATATTCCCAAGCCTCTTTTTCCTTTGGCTGGACAACCAATGGTGCATCACCCAATTTCAGCTTGTAAAAGGATTCCAAATCTGGCTCAGATTTTTCTTGTTGGTTTCTATGAGGAGCGTGAATTTGCATTATATTTATCTTCCATTTCTAATGAACTGAAAGTTCCTATTAGATATTTGAAGGAACAGAAACCACATGGTTCTGCTGGTGGACTTTTTCACTTCAGAGATCTTATCATGGAAGACAGTCCGTCACATATCTTCTTGCTGAATTGTGACGTTTGCTCGAGTTTTCCACTCCCGAAAATGCTAGATGCTCACAAAAGTTATGGAGGGATGGGAACAATCCTCGTAATCAGAGTATCAGCTGAGGCAGCTCACCAGTTTGGAGAGTTGATTGCGGATCCAATAACAAACGAACTACTTCACTATGCGGAAAAACCCGAAACTTTTGTCAGTGATCTCATTAACTGTGGTGTCTACATATTTACACCAGACATATTTTCCACAATTCAAGGTGTTTCGACGCAGCGGAAAGAGAGAGCAAATTTGAGCCGATTGTCTAGCTTTGAAGCCCTCCAGTCTGCTACAACAAGGAGCTTGCCTAAAGACTACGTAAGATTGGATCAAGACATTCTATCACCTTTTGCGGGTAAGAAACAGTTATATACGTATGAAACGATGGACTACTGGGAACAAATCAAAACGCCTGCAATGTCGTTGAAATGCTCTGGCTTATATCTTGCTCAATTCCGGGTCACCTCCTCCAACCTATTGGCAAGTGGAGATGGTATGAAAAATGCTATCATCATCGGTGACGTTTATATTCATCCTTCAGCTAAAGTACATCCAACTGCCAAGATTGGTCCGAATGTCTCAATATCGGCTAATGCTCGAATTGGAGCTGGTTCTAGGCTCATTAGTTGTATCATCCTTGATGATGTTGAAATTAAGGATAATGCAGTTGTCATACATGCAATTGTTGGATGGAAATCGTCTATTGGTCGATGGTCTCGAGTACAGGCTGATGGAGATTACAATGCAAAGCGGGGAATTACGATTCTAGGTGAAGCAGTCGTGGTTGAGGATGAAGTAGTTGTGACAAACAGTATTGTTCTCCCAAACAAGACTCTTAATGTGAGTGTTCAAGAGGAAATAATTCTATGA 1251 41.89 MGSTEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFYEEREFALYLSSISNELKVPIRYLKEQKPHGSAGGLFHFRDLIMEDSPSHIFLLNCDVCSSFPLPKMLDAHKSYGGMGTILVIRVSAEAAHQFGELIADPITNELLHYAEKPETFVSDLINCGVYIFTPDIFSTIQGVSTQRKERANLSRLSSFEALQSATTRSLPKDYVRLDQDILSPFAGKKQLYTYETMDYWEQIKTPAMSLKCSGLYLAQFRVTSSNLLASGDGMKNAIIIGDVYIHPSAKVHPTAKIGPNVSISANARIGAGSRLISCIILDDVEIKDNAVVIHAIVGWKSSIGRWSRVQADGDYNAKRGITILGEAVVVEDEVVVTNSIVLPNKTLNVSVQEEIIL* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1195215 1199862 + CsaV3_1G001840.1 Csa01g00184 514681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00184 416 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 3 416 - -
Csa01g00184 416 CDD M1P_guanylylT_A_like_N 10 275 - -
Csa01g00184 416 Pfam Nucleotidyl transferase 10 223 IPR005835 GO:0009058|GO:0016779
Csa01g00184 416 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 3 416 - -
Csa01g00184 416 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 278 IPR029044 -
Csa01g00184 416 Gene3D Hexapeptide repeat proteins 285 413 - -
Csa01g00184 416 SUPERFAMILY Nucleotide-diphospho-sugar transferases 8 358 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00184 K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] - csv:101213901 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00137 Csa-Chr6:901523 Csa01g00184 Csa-Chr1:1195215 1.06E-57 transposed
Csa01g00184 Csa-Chr1:1195215 Csa03g03891 Csa-Chr3:34156015 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g682 . . Bda06g00574 . Bpe12g00576 Bpe13g00205 Bma06g00254 . . . . . . . Sed08g0170 . Cpe04g01534 Bhi02g00389 Tan09g2197 Cmetu05g0932 . Hepe09g0166 . . Cla06g01633 Cam06g1816 Cec06g1866 . Clacu06g1774 Cmu06g1716 Cre06g2536 . . Cone13ag0117 Cone19ag0119 . . . . Blo13g00041 . Bda11g01604 . Bpe07g00816 . . Bma08g00186 . Cmo10g00163 . . . . . . . . . . . . . . . . . . . . . Lsi06g01515 Csa01g00184 Chy02g02549 Cme02g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001958 2 5 2 3 3 2 2 1 2 2 2 2 2 2 2 3 2 3 2 2 2 2 2 2 2 2 1 4 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00184 Csa_Chr01 FPKM 19.370668 21.332869 23.995104 20.04845 13.351798 11.815732 12.681547 14.93256 13.318317 15.005284