Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00186 ATGGCGACGGTTCCTGATCTCTTCCGCCGCAACGGACTTGTTGGGTTTTCCGACGAGTCGAAACAGAGGAGTTCCGGTTCCACTCAGCTTCATGTTCTTGCTGTTGATGATAGTTTTGTTGATCGGAAGGTTATTGAGCGGTTGTTGAAGAGTTCGTCATGTGAAGTGACTGTTGTTGAGAGTGGGAGAAGTGCTCTTCAGTATTTGGGTTTGGATGGGGAAACTAACTCTGTTCAGTTTAGTAGTGCTTTGAAGGTGAATCTCATTATTACAGATTACTCCATGCCTGAAATGACAGGATATGAACTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTATGGCTCGTATCGACAGTTGTTTAAAGGAAGGGGCTGAAGAATTCATAGTAAAGCCAGTGAAACTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGGAGGGAAGAAAATTGATCTTAAGAGGAAACTCCATCTCAATCATGATCACAACCCATTGTCTCCAGCCTCTCCAACGCCGTCGATGACAGCGTTCGACCAATGCCAAGGATTCAAGCAACGATCACCACCGTCGTTACGACCGTCCTCGATCATACATTCATCAAAGAAACCTAGAAATGGTGCACAAGAAGCTTCCAAGGGAAAGGCCAACCCTGGAAAAGCTACGATTTTGGCTCTTGGGAAAGCATTCCCTCCTCAACTTGTCCTTCAAGACTACCTAGTCGACGGCTATTTCAAGGACACAAGCTGCGATGATATTGATCTCAAGCAGAAACTCACTCGACTATGTAATTTTAATCTTTCACTCTTTCTTCTTTTTTTTGGAAATATCTCATACTTCATTGATCTGAAAGAACTGAATGGAACTTCTAAGATGACAACAACAGTAAAAACTAGATACGTGGTGATGTCAGAAGAGATCTTGAAGAAGTACCCAGAGCTAGCAAAGGAAGGTCAACCGACCATAAAGCAGAGACTGGAGATTTGCAACAAAGCTGTGACAGAAATGGCCATTGAAGCTTCACAAGCTGCCATTAACAACTGGGGAAGGCCAGCTTCAGACATTACCCACTTAGTCTATGTTTCTTCAAGTGAAGCTCGCTTGCCTGGTGGTGATCTCTTCCTAGCAAGGGGCCTTGGACTCAGCCCTCAAACCCAACGAGTCATGCTTTACTTCACGGGTTGCTCGGGAGGCGTGGCAGGCCTTAGAGTCGCAAAAGACTTAGCTGAAAACAACCCAGGAAGCCGAGTCCTGCTTGTCACCTCTGAAACCACCATTATCGGCTTCAAGCCACCGAGTGTAAATCGTCCATACGATCTCGTAGGCGTGGCACTATTTGGGGATGGTGCAGGGGCGATGGTAATTGGGAGAGACCCTTTTTTGGGCATTGAACGACCACTCTTTGAACTCCACACAACAACCCAGAAATTCATTCCAGATACTCAGAACATAATCGATGGGAAACTGTCGGAGGAAGGTATTAGTTTCACAATAACAAGAGAACTTCCTCAGATAATTGAAGACAACATCGAAAGTTTCTGTGAGACATTTCTTCAAACACTTGGGTTACATGAGAAAGAATACAACAAAATATTCTGGGCAGTACATCCAGGTGGGCCAGCGATATTGAACAGGTTGGAGAAGAGGCTAGAACTGTTACCTGAGAAGCTGACAGCGAGCCGACGAGCTCTGATGGACTATGGAAATGCGAGTAGTAACACGATCGTGTACGTATTGGAATACATGATGGAAGAAAGCTTGAAAATGAAGATGGAAGGTAGGAAAATTGAGGAATGGGGATTGATTCTGGCGTTTGGACCTGGGATTTCATTTGAAGGGATTCTGGCGAGGAATCTTGCCGTATGA 1917 44.55 MATVPDLFRRNGLVGFSDESKQRSSGSTQLHVLAVDDSFVDRKVIERLLKSSSCEVTVVESGRSALQYLGLDGETNSVQFSSALKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENIMARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENGGKKIDLKRKLHLNHDHNPLSPASPTPSMTAFDQCQGFKQRSPPSLRPSSIIHSSKKPRNGAQEASKGKANPGKATILALGKAFPPQLVLQDYLVDGYFKDTSCDDIDLKQKLTRLCNFNLSLFLLFFGNISYFIDLKELNGTSKMTTTVKTRYVVMSEEILKKYPELAKEGQPTIKQRLEICNKAVTEMAIEASQAAINNWGRPASDITHLVYVSSSEARLPGGDLFLARGLGLSPQTQRVMLYFTGCSGGVAGLRVAKDLAENNPGSRVLLVTSETTIIGFKPPSVNRPYDLVGVALFGDGAGAMVIGRDPFLGIERPLFELHTTTQKFIPDTQNIIDGKLSEEGISFTITRELPQIIEDNIESFCETFLQTLGLHEKEYNKIFWAVHPGGPAILNRLEKRLELLPEKLTASRRALMDYGNASSNTIVYVLEYMMEESLKMKMEGRKIEEWGLILAFGPGISFEGILARNLAV* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1207077 1211340 + CsaV3_1G001860.1 Csa01g00186 514683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00186 638 CDD CHS_like 238 632 - -
Csa01g00186 638 PANTHER TYPE III POLYKETIDE SYNTHASE B 308 636 - -
Csa01g00186 638 PANTHER TYPE III POLYKETIDE SYNTHASE B 230 281 - -
Csa01g00186 638 Gene3D - 29 187 - -
Csa01g00186 638 SUPERFAMILY Thiolase-like 235 477 IPR016039 GO:0016746
Csa01g00186 638 MobiDBLite consensus disorder prediction 198 224 - -
Csa01g00186 638 SMART REC_2 30 155 IPR001789 GO:0000160
Csa01g00186 638 Gene3D - 213 483 IPR016039 GO:0016746
Csa01g00186 638 Gene3D - 484 636 IPR016039 GO:0016746
Csa01g00186 638 ProSiteProfiles Response regulatory domain profile. 31 159 IPR001789 GO:0000160
Csa01g00186 638 MobiDBLite consensus disorder prediction 198 233 - -
Csa01g00186 638 Pfam Chalcone and stilbene synthases, C-terminal domain 486 636 IPR012328 -
Csa01g00186 638 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 308 636 IPR011141 GO:0009058|GO:0016747
Csa01g00186 638 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 230 281 IPR011141 GO:0009058|GO:0016747
Csa01g00186 638 Pfam Chalcone and stilbene synthases, N-terminal domain 310 476 IPR001099 -
Csa01g00186 638 Pfam Chalcone and stilbene synthases, N-terminal domain 227 281 IPR001099 -
Csa01g00186 638 SUPERFAMILY CheY-like 29 154 IPR011006 -
Csa01g00186 638 CDD REC_typeA_ARR 32 154 - -
Csa01g00186 638 Pfam Response regulator receiver domain 32 151 IPR001789 GO:0000160
Csa01g00186 638 SUPERFAMILY Thiolase-like 483 634 IPR016039 GO:0016746
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00186 Csa-Chr1:1207077 Csa04g01768 Csa-Chr4:17369346 4.69E-163 dispersed
Csa06g02113 Csa-Chr6:18803860 Csa01g00186 Csa-Chr1:1207077 1.75E-06 dispersed
Csa03g01239 Csa-Chr3:9500060 Csa01g00186 Csa-Chr1:1207077 2.59E-07 transposed
Csa03g02576 Csa-Chr3:24215488 Csa01g00186 Csa-Chr1:1207077 3.94E-94 transposed
Csa05g02855 Csa-Chr5:28884165 Csa01g00186 Csa-Chr1:1207077 3.94E-50 transposed
Csa01g00186 Csa-Chr1:1207077 Csa05g02375 Csa-Chr5:25975705 3.05E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30611 PF00195 Chal_sti_synt_N 1.80E-78 CL0046 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00186 - - csv:101210994 740.339