Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00189 ATGGCTCTCTCTGCCTCTACGCCGCAGAGCTTGAAGCTTCGTATTCTCTCGTGCCTTACCAAGCTTTCCGATCGAGATACCTATTCTCTTGCTGCATCCGAGCTAGAATCCATTGCTCAGAATCTTGACGGGAGTACCTTGCCGATTTTCCTTTCATGTATATATTCCACTGATGCTTCGGATAAATTGCTGGTTAGGAAGCAATGCATTCGTCTCTTTGCTGTTGTCTCAGAGATTCATGGAAATTCTCTCGCTCCTTACCTATCGAAGATTCTTTCTAATATCACACGCCGGTTCCGCGATCCTGATTCGTCGGTCCGATCTGCTTGTGTTAGCTCTGTAACAGCATTAGCTTCCGGTGTTACCAAACCGCCGTTTTCGACATTTTTGAAGCCTTTAACTGATTCGCTTTTCACGGAGCAAGATTCTAATTCGCAGGTCGGAGCGGCGTTGTGCTTGGCTTCGGCAATTGATGCTGCACCGGATCCGGATCCGGTTAAGATCGGCAAGCTTTTGCCGAGGTTTGAGAAGCTTTTGAAATGCGAGAGTTTCAAGGCGAAGCCGGCTCTCTTAACGCTGATCGGGAGTGTTATTGGAGTTGACGGAGCTTTAGGAAATGGAGCTCTAAAAAATTTGGTCCCCTGCTTGGTTGCATTCCTCAGCAGTGAGGATTGGGCGGCGAGAAAGTCTGCGGCAGAGGCGTTAGGTAAGCTAGCAGTCGTGGAGAGGGATGCTCTGGCAGAGTTCAAGGCCGGTTGCTTGAAAACGCTCGAGAGTCGGCGATTCGATAAGGTTAAAGCTGTACGTGAGGTAATGAGTCAGATGCTCGAGGCATGGAAACAGATTCCTGATCTCTCGGATGAGGCATCTGCGCCTGCTTATTCCCAATCTTCCTCGAAAGAAATCGTAAGTGATGGACGTTATCCACCTGGATTTAAGAATAATTCTTCAGCTCGTCTTGATGCTCCTCTCCCGAGGAAGAACGTTATCTCAGCTTACAGGTCTACACCGCCGGATGCCTCACCTGCGACGGCAGCGAGAAGGAGAAGCTCTTTGAGCGGTGGTGATAAGAAAGCAAGTTTGTCAATGCTCCAGAAGGCTGAGCGTAAGAAGCCTCTGGACTGGAAAGTAGAAGTCTCTGTTAGGAAATCTCCCTCGGGAGAACTGAAGGAAAGAGATGAAAACATTCCGGATAGAAGGTTCAGTGAGAAAACAAAGATTTCGAAACCAGAAACAAAACGCGCACTCTTCAACAAGATTTCTGACGATAAGACTATTAAATTCGGTGGACTCCGGTCTGGATCTCGCGTAGTTCCTTGTCCAGAGGATTTTCCTGAATCGACTGTTGTAGCAAGTAGTGCAACCGATGATCTGCACAGGAACCACAAAGACTCTGAAGAATTACATTTGATCCGTAACCAGCTTAGTCAAATTGAAAAGCAGCAATCCAGTCTTCTGGATATCCTCCAGAACTTCATTGGGAGTTCCCAGAACGGAATGCGATCCTTGGAGACGCGTGTACATGGTCTCGAACTGGCATTGGATGAGATCTCATATGATCTAGCTGTATCAAGTGGAAGGATGTCTTATGCTAATACTCCCACAACCACTTGTTGCCTACTACCAGGAGCTGATTTTTTGAGCTCAAGGTTCTGGAAGAGAGCAGAAAGCAGACACTCAACGTCAAAGTTCTCTACTCCCATTCGTGCAACTCCACTGGCTCCAATCCGCAGCAGATCAGGCGATCGCCATGGAACCAATGTGGATGTTGGATCCACGAATCTGGAGAATCATAGGTTTCATATCCAGCGACGGGGTGGATTTATGGTGAATCCATTGGCTGTGAGACAAAGTGAACCCAGGGCTGCCTCAGATGTAACACACTAA 1887 47.8 MALSASTPQSLKLRILSCLTKLSDRDTYSLAASELESIAQNLDGSTLPIFLSCIYSTDASDKLLVRKQCIRLFAVVSEIHGNSLAPYLSKILSNITRRFRDPDSSVRSACVSSVTALASGVTKPPFSTFLKPLTDSLFTEQDSNSQVGAALCLASAIDAAPDPDPVKIGKLLPRFEKLLKCESFKAKPALLTLIGSVIGVDGALGNGALKNLVPCLVAFLSSEDWAARKSAAEALGKLAVVERDALAEFKAGCLKTLESRRFDKVKAVREVMSQMLEAWKQIPDLSDEASAPAYSQSSSKEIVSDGRYPPGFKNNSSARLDAPLPRKNVISAYRSTPPDASPATAARRRSSLSGGDKKASLSMLQKAERKKPLDWKVEVSVRKSPSGELKERDENIPDRRFSEKTKISKPETKRALFNKISDDKTIKFGGLRSGSRVVPCPEDFPESTVVASSATDDLHRNHKDSEELHLIRNQLSQIEKQQSSLLDILQNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSSRFWKRAESRHSTSKFSTPIRATPLAPIRSRSGDRHGTNVDVGSTNLENHRFHIQRRGGFMVNPLAVRQSEPRAASDVTH* 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1232528 1236547 + CsaV3_1G001890.1 Csa01g00189 514686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00189 628 SUPERFAMILY ARM repeat 11 280 IPR016024 -
Csa01g00189 628 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 8 627 - -
Csa01g00189 628 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 8 627 IPR033337 GO:0005874|GO:0008017
Csa01g00189 628 MobiDBLite consensus disorder prediction 290 367 - -
Csa01g00189 628 Pfam HEAT repeat 212 239 IPR000357 GO:0005515
Csa01g00189 628 Gene3D - 4 366 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00189 - - - csv:101211494 1191.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00189 Csa-Chr1:1232528 Csa06g02216 Csa-Chr6:19979710 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g669 . . . . . . . . . . Cma10g00157 . . Car11g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00169 Cmo11g00126 . . . . . . . . . . . . . . . . . . . . . Csa01g00189 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005976 1 1 1 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00189 Csa_Chr01 FPKM 1.406863 0.0 1.539774 2.839386 0.0 0.0 0.994731 0.0 0.789915 0.0