Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00192 | ATGGTGTCCGCATCGATTCAGAAGAACATGCACTCTCTTCTTGTAGCCAATCTCACGAAGCTAACGATTCCTTCATCTTCTTCTTCTTCTTCTCCTTCTGCATCAGCCGCCGCCGTTCACGACTTTGATTTCAACGATGTCTTTGGCCCTACTAATCCGTCCCCGTCATCTTTTCACGGGGACCCACAACACCATGAACAGCAACAACCAGTGGTTATTCACAATAGATCTCATTCATTTGTGGGTCCTTCTCCCCGGTTAACTCCTCCAGCTTCTCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAGGAGGAAGAAGAAGAAAATGACCTAGAAATCTCGACTCGTGATGGAGCTCAAGAGGAGGAGAAAAGGGTTGGTGAAACTGAAAATTGTAGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGTAAGGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTGATAATGATGAGATTTATGCTATGAAAGTCATGAGAAAGGATACTATTATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTTCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGAGTCTATGCAGCTGAGATCGTATCGGCTGTTTCGCATCTTCACAATTGTGGCATTGTGCACCGTGATCTCAAGCCTGAGAACATTCTCATGGATGCTGATGGACATGTAGTGCTTACTGATTTTGGACTGGCCAAGGAGATTGATGAATCAAGTCGGTCGAATTCGTTGTGTGGAACAACTGAATACATGGCTCCAGAAATCTTGCTTTCTAGAGGCCATAACAAAGATGCTGATTGGTGGAGTGTTGGAATCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACACACCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCACCATACCTAAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTGCTAGAAAAGGAGCCTTCTAAAAGATTAGGTAGTGGACCGAAGGGAGGAGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAGTGTAGGGAGCTGCAACCGAAATTCAAACCGGATGTCAGTGGGAATGACTGCACAGCAAATTTCGATCACTGTTGGACAGCAATGCCCCCTGACGACTCACCAGCTCCGACCCCAACAGATGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCTTTGGCTTTCATCATCTGGATAG | 1452 | 44.35 | MVSASIQKNMHSLLVANLTKLTIPSSSSSSSPSASAAAVHDFDFNDVFGPTNPSPSSFHGDPQHHEQQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEEENDLEISTRDGAQEEEKRVGETENCSGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSDNDEIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSRGHNKDADWWSVGILLYEMLSGQPPFTHTNRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLEKEPSKRLGSGPKGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVSGNDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNLWLSSSG* | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1256453 | 1259233 | - | CsaV3_1G001920.1 | Csa01g00192 | 514689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00192 | 483 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 6 | 481 | - | - | |
Csa01g00192 | 483 | MobiDBLite | consensus disorder prediction | 46 | 69 | - | - | |
Csa01g00192 | 483 | SMART | pkinase_C_6 | 415 | 474 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa01g00192 | 483 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 277 | 289 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00192 | 483 | SUPERFAMILY | Protein kinase-like (PK-like) | 147 | 474 | IPR011009 | - | |
Csa01g00192 | 483 | ProSitePatterns | Protein kinases ATP-binding region signature. | 156 | 187 | IPR017441 | GO:0005524 | |
Csa01g00192 | 483 | Gene3D | Phosphorylase Kinase; domain 1 | 149 | 456 | - | - | |
Csa01g00192 | 483 | Pfam | Protein kinase C terminal domain | 435 | 472 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Csa01g00192 | 483 | MobiDBLite | consensus disorder prediction | 99 | 137 | - | - | |
Csa01g00192 | 483 | SMART | serkin_6 | 150 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00192 | 483 | MobiDBLite | consensus disorder prediction | 49 | 69 | - | - | |
Csa01g00192 | 483 | Pfam | Protein kinase domain | 151 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00192 | 483 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 6 | 481 | - | - | |
Csa01g00192 | 483 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 433 | - | - | |
Csa01g00192 | 483 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 415 | 482 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa01g00192 | 483 | MobiDBLite | consensus disorder prediction | 117 | 134 | - | - | |
Csa01g00192 | 483 | ProSiteProfiles | Protein kinase domain profile. | 150 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00192 | 483 | MobiDBLite | consensus disorder prediction | 102 | 116 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00192 | Csa-Chr1:1256453 | Csa05g00547 | Csa-Chr5:3529216 | 1.65E-71 | dispersed | |
Csa05g02756 | Csa-Chr5:28282064 | Csa01g00192 | Csa-Chr1:1256453 | 1.00E-63 | dispersed | |
Csa07g01616 | Csa-Chr7:16674560 | Csa01g00192 | Csa-Chr1:1256453 | 3.12E-61 | dispersed | |
Csa01g00192 | Csa-Chr1:1256453 | Csa07g00227 | Csa-Chr7:1788691 | 1.23E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77734 | PF00069 | Pkinase | 4.80E-72 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00192 | K04688 | - | csv:101214867 | 967.607 |