Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00192 ATGGTGTCCGCATCGATTCAGAAGAACATGCACTCTCTTCTTGTAGCCAATCTCACGAAGCTAACGATTCCTTCATCTTCTTCTTCTTCTTCTCCTTCTGCATCAGCCGCCGCCGTTCACGACTTTGATTTCAACGATGTCTTTGGCCCTACTAATCCGTCCCCGTCATCTTTTCACGGGGACCCACAACACCATGAACAGCAACAACCAGTGGTTATTCACAATAGATCTCATTCATTTGTGGGTCCTTCTCCCCGGTTAACTCCTCCAGCTTCTCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAGGAGGAAGAAGAAGAAAATGACCTAGAAATCTCGACTCGTGATGGAGCTCAAGAGGAGGAGAAAAGGGTTGGTGAAACTGAAAATTGTAGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGTAAGGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTGATAATGATGAGATTTATGCTATGAAAGTCATGAGAAAGGATACTATTATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTTCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGAGTCTATGCAGCTGAGATCGTATCGGCTGTTTCGCATCTTCACAATTGTGGCATTGTGCACCGTGATCTCAAGCCTGAGAACATTCTCATGGATGCTGATGGACATGTAGTGCTTACTGATTTTGGACTGGCCAAGGAGATTGATGAATCAAGTCGGTCGAATTCGTTGTGTGGAACAACTGAATACATGGCTCCAGAAATCTTGCTTTCTAGAGGCCATAACAAAGATGCTGATTGGTGGAGTGTTGGAATCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACACACCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCACCATACCTAAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTGCTAGAAAAGGAGCCTTCTAAAAGATTAGGTAGTGGACCGAAGGGAGGAGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAGTGTAGGGAGCTGCAACCGAAATTCAAACCGGATGTCAGTGGGAATGACTGCACAGCAAATTTCGATCACTGTTGGACAGCAATGCCCCCTGACGACTCACCAGCTCCGACCCCAACAGATGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCTTTGGCTTTCATCATCTGGATAG 1452 44.35 MVSASIQKNMHSLLVANLTKLTIPSSSSSSSPSASAAAVHDFDFNDVFGPTNPSPSSFHGDPQHHEQQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEEENDLEISTRDGAQEEEKRVGETENCSGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSDNDEIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSRGHNKDADWWSVGILLYEMLSGQPPFTHTNRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLEKEPSKRLGSGPKGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVSGNDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNLWLSSSG* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1256453 1259233 - CsaV3_1G001920.1 Csa01g00192 514689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00192 483 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 481 - -
Csa01g00192 483 MobiDBLite consensus disorder prediction 46 69 - -
Csa01g00192 483 SMART pkinase_C_6 415 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa01g00192 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Csa01g00192 483 SUPERFAMILY Protein kinase-like (PK-like) 147 474 IPR011009 -
Csa01g00192 483 ProSitePatterns Protein kinases ATP-binding region signature. 156 187 IPR017441 GO:0005524
Csa01g00192 483 Gene3D Phosphorylase Kinase; domain 1 149 456 - -
Csa01g00192 483 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674|GO:0005524|GO:0006468
Csa01g00192 483 MobiDBLite consensus disorder prediction 99 137 - -
Csa01g00192 483 SMART serkin_6 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00192 483 MobiDBLite consensus disorder prediction 49 69 - -
Csa01g00192 483 Pfam Protein kinase domain 151 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00192 483 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 481 - -
Csa01g00192 483 Gene3D Transferase(Phosphotransferase) domain 1 238 433 - -
Csa01g00192 483 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa01g00192 483 MobiDBLite consensus disorder prediction 117 134 - -
Csa01g00192 483 ProSiteProfiles Protein kinase domain profile. 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00192 483 MobiDBLite consensus disorder prediction 102 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00192 Csa-Chr1:1256453 Csa05g00547 Csa-Chr5:3529216 1.65E-71 dispersed
Csa05g02756 Csa-Chr5:28282064 Csa01g00192 Csa-Chr1:1256453 1.00E-63 dispersed
Csa07g01616 Csa-Chr7:16674560 Csa01g00192 Csa-Chr1:1256453 3.12E-61 dispersed
Csa01g00192 Csa-Chr1:1256453 Csa07g00227 Csa-Chr7:1788691 1.23E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77734 PF00069 Pkinase 4.80E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00192 K04688 - csv:101214867 967.607