Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00194 ATGGTTAAATATCAGCTCCTCCAAGGAAACAGGACAAATTTACCGGTAAATGGATTTCAAAACTCAACCACTGGTTTTAGGTTGACGAACCAGCTAAGTCCAGCCGGAGTGCACTTGGGTCGGAGCCCAAAACCCCAAAAGTGGGCAATTTCTGAAGCCCCAATGCTCCGAAATTATAAGCCATTGTTACCCATTGCAGCAAATTCACTGTTCAATCACATCCAATCTTCAGCTTTTCAACAATCCCTTCCGCCATTATCGCGTTTCTCATCTGGGTATCCAAAAATGGCGACAAACGAGAGTATCAAGCCAGAAAACGAAGACCAATTGAAACACATATTTGATCAGAAACGGGTTCTTCGATCCAGCGTTCGAAAGGCCCTCAAAGCCATGGACCCTTCTTTCCGATCCCAGGAAGACAATGTAATTCAGAGTATTGTCCTGGAAGCTCCGTGGTTTAAATCTAGTCAGCGATTATGTGCTTATGTGAGTTGCAGTGCGTTAAGGGAAGTTGATACTTCGAGACTATTATCAGAGATTCTTCAACACCCTCCTAAAGATGGTCATTCGAAGAAGATTTATGTCCCACGTGTGGAGGACAAGAATAGTCACATGCGGATGTTCAATATTTCACGTATGGATGATCTTATTGCAAACTCAATGAACATCCTAGAGCCAGCTCCAGTGGATGGTGATGGAAATGAACGTGAAGATGTTATGCAGACAAAAGACCCCATTGATTTATTTCTCTTACCAGGACTAGCATTTGACAAATCAGGAAGACGCCTTGGTCGAGGGGGAGGTTATTATGATACCTTCCTAAAGAACTACCAAGAACTTGCAAAGGCGCGGAATTGGAAGCAGCCCCTCCTTGTTGCACTGTCCTATTCGGTGCAGATAATGGATGAAGGAATTATACCACTCACTCCAAACGATGTTTTAGTTGATGCTCTTGTATCACCATCTGGTGTGATTCCCATCAGCTCAGCTGGATTGGACAAATATGCCATCACAAGGAAGTTATGGTTCTTCTGCGCTTTCTTCATAGCCATTGGAAAGGTAGCTTCCAAATGCGCCGACCCCGACCCGTTGCAGGACTTCTGTGTTGCAGATTTAAATGCTACTGTTTCCCTTAATGGCTTCCCTTGCAAGCCAGCTTCAGAAGTTACTGCTGATGATTTCTTCTTTGATGGATTGAGCAAAGAAGGCAACACAGACAATCCTTTTGGTTTTGGGGTCACACAAGGAAATGTTCTTACATTTCCAGGACTCAATACACTTGGGCTATCCATGAACCGTGTTGACCTTGCTCGGGGAGGAATAAACGCACCTCACTCACATCCCCGTGCCACTGAAAGTATCGTTGTTATTAAAGGGAAGGTTCTTGTTGGTTTTGTGTCAACGAGTAGTGTGTACTACTATAAGGTTTTGACTGTTGGACAGATGTTCGTTGTTCCCAGAGGACTTGTTCATTTCCAATATAATGTTGGGCATGGGAAAGCAACTCTGATCACAGCTTTCAACAGTCAGTTGCCGGGGGCTGTGGTCGTGTCCCGAACTTTGTTCGCTTCAAATCCTCCCCTCCCTGTCGAAATTCTAACCAAGGCCTTCCAAGTCGATGCTAGTGTTATCAACAGCATAAAGTCCAAATTTGCTTAA 1659 44.36 MVKYQLLQGNRTNLPVNGFQNSTTGFRLTNQLSPAGVHLGRSPKPQKWAISEAPMLRNYKPLLPIAANSLFNHIQSSAFQQSLPPLSRFSSGYPKMATNESIKPENEDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSSQRLCAYVSCSALREVDTSRLLSEILQHPPKDGHSKKIYVPRVEDKNSHMRMFNISRMDDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKSGRRLGRGGGYYDTFLKNYQELAKARNWKQPLLVALSYSVQIMDEGIIPLTPNDVLVDALVSPSGVIPISSAGLDKYAITRKLWFFCAFFIAIGKVASKCADPDPLQDFCVADLNATVSLNGFPCKPASEVTADDFFFDGLSKEGNTDNPFGFGVTQGNVLTFPGLNTLGLSMNRVDLARGGINAPHSHPRATESIVVIKGKVLVGFVSTSSVYYYKVLTVGQMFVVPRGLVHFQYNVGHGKATLITAFNSQLPGAVVVSRTLFASNPPLPVEILTKAFQVDASVINSIKSKFA* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1277752 1282211 + CsaV3_1G001940.1 Csa01g00194 514691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00194 552 CDD cupin_OxOx 360 551 - -
Csa01g00194 552 Pfam Cupin 399 542 IPR006045 -
Csa01g00194 552 SUPERFAMILY NagB/RpiA/CoA transferase-like 116 327 IPR037171 -
Csa01g00194 552 Pfam 5-formyltetrahydrofolate cyclo-ligase family 117 321 IPR002698 -
Csa01g00194 552 Gene3D Jelly Rolls 359 552 IPR014710 -
Csa01g00194 552 PRINTS Germin signature 475 495 IPR001929 GO:0030145
Csa01g00194 552 PRINTS Germin signature 445 465 IPR001929 GO:0030145
Csa01g00194 552 PRINTS Germin signature 508 523 IPR001929 GO:0030145
Csa01g00194 552 Gene3D - 109 324 IPR024185 -
Csa01g00194 552 TIGRFAM MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 117 320 IPR002698 -
Csa01g00194 552 SUPERFAMILY RmlC-like cupins 360 551 IPR011051 -
Csa01g00194 552 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 92 335 - -
Csa01g00194 552 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 92 335 - -
Csa01g00194 552 SMART Cupin_1_3 397 545 IPR006045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00194 K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] - csv:101211739 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00194 Csa-Chr1:1277752 Csa06g03860 Csa-Chr6:30591022 7.32E-66 dispersed
Csa01g01487 Csa-Chr1:10614380 Csa01g00194 Csa-Chr1:1277752 9.34E-31 dispersed
Csa01g01579 Csa-Chr1:11423205 Csa01g00194 Csa-Chr1:1277752 9.34E-31 dispersed
Csa01g00194 Csa-Chr1:1277752 Csa01g00195 Csa-Chr1:1284885 2.09E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g470 . . Bda06g00567 . . . . . . . Cma10g00162 . Car10g00153 Car11g00125 Sed08g0182 . Cpe04g01527 Bhi02g00377 Tan09g2182 Cmetu02g0955 . Hepe09g0156 . . Cla06g01624 Cam06g1805 Cec06g1856 Cco06g1862 Clacu06g1765 Cmu06g1709 Cre06g2527 . . . Cone19ag0105 . . . . . Blo15g00287 . . Bpe07g00809 . . . . Cmo10g00173 . . . . . . Cpe18g00816 . . . . . . . . . . . . . . Lsi06g01505 Csa01g00194 Chy02g02538 Cme02g01922
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007790 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00194 Csa_Chr01 FPKM 2.172358 2.340877 2.54122 3.30388 0.244991 0.366609 0.533875 0.0 0.0 0.0