Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00196 ATGGATCCTCCCCTTGTTAACGAATCCTCCTTTTCTGCTGCGAATCCTTCTTCTTACAGCTTGGCTTCGATTTGGCCTTTTGGGGGGGACCAGGGTGGGAGTGTATTGGGGCTTCGAATGGCTAATTTGGCTCAGAATCTTGGTGGGTTTCGTGAGTGCTCCACGAATCGTGATGGGTCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCTGAAGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAATTCAAATGATAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGATCCTAACTCATCAGATGGTAAGAAGCTGGCCGAGCAAAGCCCGAAACCCGAACCACCAAAAGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCTAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTACTCTTTATCTGTTACTTTGTGTGTAAATAG 588 45.24 MDPPLVNESSFSAANPSSYSLASIWPFGGDQGGSVLGLRMANLAQNLGGFRECSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNDKRMKVVESRDENGGIKAEVDPNSSDGKKLAEQSPKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVLFICYFVCK* 196
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 1286661 1290828 - CsaV3_1G001960.1 Csa01g00196 514693
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00196 195 Gene3D - 143 187 IPR036638 GO:0046983
Csa01g00196 195 MobiDBLite consensus disorder prediction 85 103 - -
Csa01g00196 195 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 187 IPR024097 GO:0006355
Csa01g00196 195 MobiDBLite consensus disorder prediction 69 84 - -
Csa01g00196 195 MobiDBLite consensus disorder prediction 50 68 - -
Csa01g00196 195 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 187 - -
Csa01g00196 195 Pfam Helix-loop-helix DNA-binding domain 157 181 IPR011598 GO:0046983
Csa01g00196 195 MobiDBLite consensus disorder prediction 104 165 - -
Csa01g00196 195 MobiDBLite consensus disorder prediction 50 165 - -
Csa01g00196 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 195 IPR011598 GO:0046983
Csa01g00196 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 185 IPR036638 GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00196 Csa-Chr1:1286661 Csa06g02222 Csa-Chr6:20032486 1.33E-32 dispersed
Csa01g00196 Csa-Chr1:1286661 Csa07g00008 Csa-Chr7:185656 1.13E-22 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30613 None None None None Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00196 - - csv:101215588 367.851