Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g00196 | ATGGATCCTCCCCTTGTTAACGAATCCTCCTTTTCTGCTGCGAATCCTTCTTCTTACAGCTTGGCTTCGATTTGGCCTTTTGGGGGGGACCAGGGTGGGAGTGTATTGGGGCTTCGAATGGCTAATTTGGCTCAGAATCTTGGTGGGTTTCGTGAGTGCTCCACGAATCGTGATGGGTCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCTGAAGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAATTCAAATGATAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGATCCTAACTCATCAGATGGTAAGAAGCTGGCCGAGCAAAGCCCGAAACCCGAACCACCAAAAGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCTAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTACTCTTTATCTGTTACTTTGTGTGTAAATAG | 588 | 45.24 | MDPPLVNESSFSAANPSSYSLASIWPFGGDQGGSVLGLRMANLAQNLGGFRECSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNDKRMKVVESRDENGGIKAEVDPNSSDGKKLAEQSPKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVLFICYFVCK* | 196 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1286661 | 1290828 | - | CsaV3_1G001960.1 | Csa01g00196 | 514693 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g00196 | 195 | Gene3D | - | 143 | 187 | IPR036638 | GO:0046983 | |
| Csa01g00196 | 195 | MobiDBLite | consensus disorder prediction | 85 | 103 | - | - | |
| Csa01g00196 | 195 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 187 | IPR024097 | GO:0006355 | |
| Csa01g00196 | 195 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
| Csa01g00196 | 195 | MobiDBLite | consensus disorder prediction | 50 | 68 | - | - | |
| Csa01g00196 | 195 | PANTHER | MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 187 | - | - | |
| Csa01g00196 | 195 | Pfam | Helix-loop-helix DNA-binding domain | 157 | 181 | IPR011598 | GO:0046983 | |
| Csa01g00196 | 195 | MobiDBLite | consensus disorder prediction | 104 | 165 | - | - | |
| Csa01g00196 | 195 | MobiDBLite | consensus disorder prediction | 50 | 165 | - | - | |
| Csa01g00196 | 195 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 153 | 195 | IPR011598 | GO:0046983 | |
| Csa01g00196 | 195 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 151 | 185 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g00196 | Csa-Chr1:1286661 | Csa06g02222 | Csa-Chr6:20032486 | 1.33E-32 | dispersed | |
| Csa01g00196 | Csa-Chr1:1286661 | Csa07g00008 | Csa-Chr7:185656 | 1.13E-22 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30613 | None | None | None | None | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g00196 | - | - | csv:101215588 | 367.851 |