Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00200 ATGTCGCAAGATTCTTCTTCTTCTTCTCCTCCTCCGATCCCCTGTGACCGATCCTCCCCTGAGCCACTTTCGCACATCGAAAACCCCAACCCCAATACGGCTAACGACGACCTTATAGCTGAGAACGAGCCCACGACTACAACCACAACGACTAACAGTGAACAACCCACCACCAGAAGGAACCGACCCTCTCGGTCTTGTACTATTCGTGCTGCCGAGCGGCTATTGGCTGCTCAGTCAGTGGTTGAGCGAAAGCCGAAGCCTAAAAAGGAGCAGCAAGAGGAGGAGTCGCCACAGCAGCAGCAATGCAGCAAGATCGTGACCCCTTTGGTTGAGGAGCCTTCGCCTTCCCAGTTGCCGCGTTGGAGCCTTCGGTCTAAGTGGGAACTCGCGTCTGTCCTTAATTTCTTGCATGTCTTTAGGCCACTACTGAATATTCATAATGAATTCACAGTTGAGGAGTTTGAGACCGCCTTGATTACACCCAACGACACTTTGAGTGACATACACATTCCATTACTAAAGGCAATTCCTCCTATTACAAGGATGGCCCTTACTCGGGGTACGTGGGTGACTGTATTGTGCAGAAAATTGCGAGACTGGTGGCACTGGGTTGCTGAAGGGGATTTGCCTATTGTTGCTTCACATGGAGTTGAAATTGAAGTTTATAAAACTCTTGATCCTGGGATGCGTGTGGTCATCTTGAAAGCACTATGTGACATCCGAGTTGAGCAAGAAGATATCCGAAGCTACATTGAAAATTCACTAAAACATGGAGTTCAACTTTCAGCTTTTCGCAAAGAACGAATTGGTGGGGACTCCCATGGAACTTATTTCTGGTATGAGGATGATCCCATAATTGGTCATCGTTTGTACCGTGAGATTAGGAAAGTTGAGTTAAAAAAAGCCAAGACCAAAGGTTCACAGGTCCTTCCTTCTACAACATATCTGTGGGAAACAGTTGCAACCAATTTTGATGAATTTCAAGATGTATCAGAAAAGCTCTTTACAAGTAAAAATCGAACAGAGGCTTCACTTGGGAAAAAGTTGAAGGTGGACATGCTTCCCGAGATCGAGAAGGTTCACAAGAGAAAAGAAAGGTTGTTGAAAAAACAGCATAGACAAGCTCTTCTCTTGGATAGTTTTGCACTTGTAGATGGACTTGGTCCAGGACGCTCACTTCGTGACAGGAAGCCGGTCACTTATACGTTTGATGATTATGACCGATCGATCAACGAGGCTATCAAAACAACCAAGCGTAAGCCTCCATCTCCAGAACCTAATCATAGAAGAGAAGCTGCTATAAAGCTTGAACCTTCTGCAAATGGAAAATGGAGCGGTCCATCATATCCATCTCAGAACTCCAATTTCAGTGCACTGTCTCCCAAGTCACCTGATTATGACGATGCCGATGAAGACGACCAACTGTCTGAACAGTTGGATCGCAGACGAAGGCAAAGGCCACAGCGGTATTCTGAAAAGGATTATGTGGAAGCATTATCAGATAATGATGCAGATTTCGACAGTGATGATGATATAGTTGGTGAAGCTGTATATGATGAGGAATATCTACGAAAACGCAAGCAAAGGCGGAAAACGTCCAGCAGTTCTGAAGGAGATGAAGAGTATCACTATGAAGAAGAAAATGATGAAGAGGAGGAGGAAGAAGAAGAAGAATCCTTGAGCATTAGTGAAGATAGTGACCAACCACGCAAAGTAAAAAAATTACCAGGACGTACGCGAAGGGAGACGAAGTTAAGGTCTGTTGGTGAGATTCAGTCGGGTCTCAGACGTAGTAAAAGGGCTACTCGAAGCCGAATAAATTATGGACAATATGATTTATCAGAATCTGAACCAGAGAATAATAAAGTTAAAAAGACTAATGCTGCATCTGATGAACACACAGATGATGCTAGTGAGAATGGAGATTATTCAGTTGACTTAAGTCAAGGGTCTGACAATGAGGATGACGAAGAAGACGATGATCAAGAAATGAAAGTTGACCAACCTGATGAAGTTTATGCACAGAATGTAGAGGAACAAAATCCTCCTGAAAAATCGGTTAGCCCAGATCAAGATGAAACCGACGGTACAAAAAAAACAAGGTTTCTTGATCTCAATGAGCTTGCTCCGGGCTCTGGTTTTGAGGATGCCCCAACTTCAGAATTGAAAGATGATACAGATGATTTCTAG 2193 44.14 MSQDSSSSSPPPIPCDRSSPEPLSHIENPNPNTANDDLIAENEPTTTTTTTNSEQPTTRRNRPSRSCTIRAAERLLAAQSVVERKPKPKKEQQEEESPQQQQCSKIVTPLVEEPSPSQLPRWSLRSKWELASVLNFLHVFRPLLNIHNEFTVEEFETALITPNDTLSDIHIPLLKAIPPITRMALTRGTWVTVLCRKLRDWWHWVAEGDLPIVASHGVEIEVYKTLDPGMRVVILKALCDIRVEQEDIRSYIENSLKHGVQLSAFRKERIGGDSHGTYFWYEDDPIIGHRLYREIRKVELKKAKTKGSQVLPSTTYLWETVATNFDEFQDVSEKLFTSKNRTEASLGKKLKVDMLPEIEKVHKRKERLLKKQHRQALLLDSFALVDGLGPGRSLRDRKPVTYTFDDYDRSINEAIKTTKRKPPSPEPNHRREAAIKLEPSANGKWSGPSYPSQNSNFSALSPKSPDYDDADEDDQLSEQLDRRRRQRPQRYSEKDYVEALSDNDADFDSDDDIVGEAVYDEEYLRKRKQRRKTSSSSEGDEEYHYEEENDEEEEEEEEESLSISEDSDQPRKVKKLPGRTRRETKLRSVGEIQSGLRRSKRATRSRINYGQYDLSESEPENNKVKKTNAASDEHTDDASENGDYSVDLSQGSDNEDDEEDDDQEMKVDQPDEVYAQNVEEQNPPEKSVSPDQDETDGTKKTRFLDLNELAPGSGFEDAPTSELKDDTDDF* 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1303593 1312830 - CsaV3_1G002000.1 Csa01g00200 514697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00200 730 MobiDBLite consensus disorder prediction 618 641 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 686 703 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 650 667 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 476 501 - -
Csa01g00200 730 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 40 729 - -
Csa01g00200 730 PANTHER REMODELING AND SPACING FACTOR 1 40 729 IPR028938 GO:0006355|GO:0031213
Csa01g00200 730 MobiDBLite consensus disorder prediction 1 105 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 518 540 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 436 730 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 502 517 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 23 65 - -
Csa01g00200 730 MobiDBLite consensus disorder prediction 541 563 - -
Csa01g00200 730 Pfam DDT domain 132 177 IPR018501 -
Csa01g00200 730 MobiDBLite consensus disorder prediction 445 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00200 - - - csv:101216302 1311.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00200 Csa-Chr1:1303593 Csa03g04378 Csa-Chr3:38242671 7.90E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g478 . . Bda06g00560 Bda15g00584 Bpe12g00564 . . Bma12g01014 . . Cma10g00169 Cma11g00171 Car10g00158 Car11g00129 Sed08g0189 . Cpe04g01523 Bhi02g00367 Tan09g2175 Cmetu02g1218 . . . . Cla06g01619 Cam06g1798 Cec06g1848 Cco06g1856 Clacu06g1758 Cmu06g1702 Cre06g2520 Cone2ag0872 Cone16ag0138 . . . . . . Blo13g00029 Blo15g00292 . . Bpe07g00803 . . Bma08g00199 . Cmo10g00181 Cmo11g00137 . . . . . Cpe18g00813 . . . . . . . . . . . . . . Lsi06g01499 Csa01g00200 Chy02g02531 Cme02g01915
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003679 3 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30615 PF02791 DDT 4.60E-08 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00200 Csa_Chr01 FPKM 59.308689 62.808823 11.923458 12.363065 9.999791 9.829647 9.637382 9.309089 10.451142 9.197629