Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00202 ATGGAATTGGAATCAGAGACTTCCAGCTTAAAGAACAAATGGGTATCAACAGTTGCTAGCGTATGGATCCAATGCACCAGTGGATCTCTTTACACTTTCTCCATCTACTCCCAAACCCTCAAATCAACTCAGGGATACGATCAATCCACTTTGGATATTGTTTCTGTTTTTAAAGACATCGGTGTCAATTGTGGCGTCCTTGCGGGATTTCTCTACTACTTTGCCACCGCCCATGGTGGTCGTCCTGGTCCGTGGATTGTTCACTTCGCCGGTGCGATTCAGTGCTTCTTGGGGTACTTTTTTATCTGGGCTGCCGTTTATGGGGTCTTACCTCGGCCGCCGGTTCCAGTTATGTGCCTTTTCATGTTGGTGGCTGCTCATGCTCAGAGCTTCTTCAACACGGCTAACGTTGTCACTGGAGTTCGAAATTTCCCCCGTTATAGTGGGACAATTGTTGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAACATACGAGACAATATTTAATGGACAACCTACCTCGTTTCTTCTGATGTTGGCGCTGCTACCAACCCTTAATTCCTTATTGTGTATGTGGTTCGTGAGAATTCACCATGTTGATGATGGGATTGAAAAAGAGCATCTGAATACCTTATCCATAATTACTCTGGTCGTTGCTACTTACCTTATGATCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCTCTACATGTTGCTACATTTATTCTACTTTTGATGTTGCTTGCATCTCCTCTATATATTGCAATTAGAGCCCAACCGAGAGAGTCCAGAAGGATTTTGCACCCTTCTTTCACAGAGAGCGACCAGCTGATTGGCCGTCACAATCAAGAGACTTCGGATTTTGACCATGAACGGGGAAGGGAATCTGAAGAAAGCCTGACTCTCTTTCAAGCTTTATACACAATAGATTTTTGGATATTGTTTTTTGCAACTGCTTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGTCAGATAGGATTATCTCTTGGTTACACAAGCTCGGAGATAAACACTTTGGTTTCCTTGTGGAGCATTTGGAATTTTTTTGGTCGTTTTGGAGCTGGGTATGTGTCAGATTATTATCTGCATGCCAAAGGATGGGCTAGGCCATTGTTCATGTTCATCACTCTAATGACCATGAGCATTGGACATGTAGTGATTGCCTCTGGCCTGCCCGGTGCTCTCTTTGCTGGTTCGATAGTAGTGGGTGTTTGTTATGGGTCTCAGTGGTCACTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCCATAACAGTAGCAAGCCCTGTTGGATCTTATTTATTTTCAGTTAGAGTTGTTGGGTATATATATGACAAGGAGGCATCAAGTGAAGGAGATACTTGTATTGGAACTTACTGCTTCATGCTATCATTTTTTATTATGGCTTTTGCCACTCTCTTGGGCTCTTTAGCAGCCCTTGGCTTATTTTTCTGGAGAAGAAGTTTCTACGATCAAGTTGTTGTCAGAAGGCTGCAGCACCCATCAAATGGATAA 1596 42.67 MELESETSSLKNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYFATAHGGRPGPWIVHFAGAIQCFLGYFFIWAAVYGVLPRPPVPVMCLFMLVAAHAQSFFNTANVVTGVRNFPRYSGTIVGIMKGFLGLSGAILIQTYETIFNGQPTSFLLMLALLPTLNSLLCMWFVRIHHVDDGIEKEHLNTLSIITLVVATYLMIKIVLEHIFTFQFPLHVATFILLLMLLASPLYIAIRAQPRESRRILHPSFTESDQLIGRHNQETSDFDHERGRESEESLTLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSSEINTLVSLWSIWNFFGRFGAGYVSDYYLHAKGWARPLFMFITLMTMSIGHVVIASGLPGALFAGSIVVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAITVASPVGSYLFSVRVVGYIYDKEASSEGDTCIGTYCFMLSFFIMAFATLLGSLAALGLFFWRRSFYDQVVVRRLQHPSNG* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1315661 1317835 - CsaV3_1G002020.1 Csa01g00202 514699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00202 531 CDD MFS_Mch1p_like 13 498 - -
Csa01g00202 531 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 9 527 - -
Csa01g00202 531 SUPERFAMILY MFS general substrate transporter 9 202 IPR036259 -
Csa01g00202 531 Gene3D MFS general substrate transporter like domains 214 512 IPR036259 -
Csa01g00202 531 Pfam Major Facilitator Superfamily 322 514 IPR011701 GO:0022857|GO:0055085
Csa01g00202 531 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 527 - -
Csa01g00202 531 Pfam Nodulin-like 13 264 IPR010658 -
Csa01g00202 531 SUPERFAMILY MFS general substrate transporter 219 514 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00202 Csa-Chr1:1315661 Csa01g00205 Csa-Chr1:1319428 0 dispersed
Csa01g00204 Csa-Chr1:1318885 Csa01g00202 Csa-Chr1:1315661 4.70E-19 dispersed
Csa01g00202 Csa-Chr1:1315661 Csa01g00203 Csa-Chr1:1318330 1.87E-18 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00202 - - csv:101216552 1068.91