Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00206 ATGGAAGGCGCCGCCGCCGATTCTTCTGATTCTTCTCTTCATCATGACTTGCCTTTCACGCCGCCGGAAGCGGCGGAGGATAATTACTATTCCGATTCAGAACTGTTTCGTGTTTCCTTGACGGAGGCTCCAATTCTCCTGCTTATTAAATTTCACCAAGCACTGCGATTGGAGGTTGCGGATTTACGGCGCGTGACGTTGGCGGCGGCGGAGAGTGGGGGTTACGGCGGCGAGTTTGTGTCGGGATTGATTCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCTGCGGAGGATGAGGTTGTATTCCCAGCACTTGATCTACATACAAAAAATGTCATCTCCACATATTCTTTGGAGCATGAGAGCTTGGATGGCCTCTTCACCTCCATTTCTAAACTCTGTGAAGACATCAATGGAGAAAACAAAGATATCTCCAAGCCATTTCAAGAACTTATTTTCTGTTTAGGCACCATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCATTGCTGATGAAGGAATTCTCTGCAAGAGAACAGGCGTCGCTTGTGTGGCAATTCATTTGTAGTGTACCAATGATACTATTGGAGGAGCTTTTGCCATGGATGATGTCTTTTCTTCCAGCAGATCAGCAATCAGAAGTTGTAAACTGTCTAAGAGATGTAGTGCCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAGCACTGAGAAACCTTGGAGAGATGTAGAAGTAGAAGATATAAAGTTACAATCATCTCAAGAAAATGGACAGAGCCCTGTTGATAGCCTTCATATTTGGCATGGTGCCATTATGAAGGATCTAAAGGAAGTATTGAAATGCCTATTTCAAGTCAAGAGTTGCACTTCAACAGCACTTTCTAACCTTGATACCTTACTTGTCCAAATAAAGTTCTTGGCTGATGTAATTCTATTTTACAGAAAGGCATCAGAGAAATTCTTTTGTCCTGTGTTCAATCAACGATCCGACGTCTGCTTAACCACCTCTGACCAATCTTTTCTTAGTGATGGTCATATTGAAGGCTTACAGCAGTTGCTACAGCATGGTGCTCAAGATACTATACCTTTGAGTATTTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTCATACGAGTCAGCAAACAGTTCACTTTTCAAGAAACAAAGGTGCTTCCAGTGATTAGAAAGAGCTGCAGCCATAAAACACAGCAACAACTCCTGTATCTGAGCCTCCGAACCTTACCACTTGGACTCTTGAAGTGTATAATTACTTGGTTTTCAGCTCACTTATCTGAGGAAGAATTGAGATCTGTACTTCAGGCCAAATCAGAGGGAAATTTTCAGGTTAACAATGCACTTGTCGCCCTCTTGCATGACTGGTTTCGAATTGGCTACTCAGGAAAAACCTCGGTCGAACAATTTGGACAAGATTTGCAACAAATTTTCAAGACCAGAAGCTATATTTTGGATAAACAGGTGGAACAAATGAAAGAAGTTGCTGGAACTTCATCGTTGAGCTCAAATGCTCAATTTTATAAGGGGGAAAACTCCGAGGAAATGGGATTACTTTCTACCAACAAGGATAAGAGCTTCATGTCAAATTCTTCACCAACTGTTTCTTGCACTGCTCCCGCTTATGGAACATCTTATTCTAGTGGAATCAATCTGCAAATACATTTTCCAGGAACAGTGAAGGTACCGTGTCCGTATACTAAACATCTTTACGAAGGACGCCCACATTCTGCTTTTAATCAGCCAAAACCAATAGACCTCATTTTTTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTTGGTTCAGCTAAACTGGTTGAACATGTTGGAATCTTGACAGAGTTTAGAAGGCGATTCCAATTGGTGAAATTTTTATATCAGATCCATACGGATGCTGAGGACCAGATTGCTTTTCCAGCTTTGGAGAAGAAGGGAAAGTTCCAAAACATTAGCTACTCCTACACTATTGATCATAAACTGGAAGTACACCAATTCAGTAAAATATCATTCGTTCTTAGTGAAATGTCTGAATTGCACTCTTCAAATTTTTATGTCAATGCTGATAGGAAAATATTTAGTCACCGGCAGCTCTGTTTGGAACTTCATGATATGTGCAAATCTTTGCACAAGTCTCTTTCTGATCACGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTCAGAGAATTCTTCACGATCGACGAACAAGAAACACTTATTGGAGCAATATTTGGCAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGTCATATTTAACACCATCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGAAATACCATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAATGTGGCCGCTGAGGTGAAAACTATTACTCCCTTACTGACTTCAGATCCTTTGGAAATCATCTCAAAATATTTATCCAAGGAAGTAACAGATGTATGTGAAGGAAATCTTTTTGGAAAAACCATCAGCTCAACACAGAAGGAACACCAATTTCATGTTACCAATGCTGACAAGACAGAAATGTTCATTTTGAATGATGAAGCAAAAGATTTTGATGGCGACCAACATGATGAAACATTTGAAGAATCCACAAAACTTGTTTCTCATGGGGTTGGTGATAGGGATGCTGATGGTATCACAGAACATGAGACCGAAAAAGAACAACCTGACGAAGGTAAGAAATCAAGTCAAAATGATCACCTTCTTACAATTAGTCAAGAAGAACTAGAGGCTGTAATAAGAAGGGTATCAAGAGACTCATCCTTAGACTCCAAAAGTAAATCCCACTTGATACAGAATTTGCTAATGAGCCGTTGGATTGCAAAGCACCATTCCCAAGTAGAGATAAACATTACATCAGAAAACCAAGGATATGCAGGTCAGTATCCATCTTATAGGGATTCCTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTATATACATGCATACATTGTCATGACGAGGCTACCGATCACTCATTGGATAGAAAAACCATCACAAAGATGATGTGCATGAACTGCTTAGTAGTTCAGCCCATAAGAAAGACATGTTCAACTCTCTCTTGTGGTAATTTATCCATGGGAAAATACTTCTGCAAGATCTGCAAACTATTTGATGATTCAAGAGATATCTACCACTGTCCATACTGCAACCTATGTCGAGTCGGGAAGGGATTGGGCATTGATTACTTCCATTGCATGAACTGCAACGCCTGTATGTCTCGTGCACTCTCAGTTCATATATGCAGAGAGAAATGCCTAGAAGACAACTGCCCTATTTGCCACGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTTCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACTCATTATACCTGCCCTATCTGTAGCAAGTCGCTAGGAGACATGCAGGTTTACTTTAAGATGTTGGATGCATTTTTGGCTGAAGAGAAAATTCCAGAAGAGTATTCTGGAAAAACTCAGGTCATATTGTGTAATGACTGTGAGAAGCGTGGAACGGCACCGTTCCACTGGTTGTACCATAAATGTTCCTATTGTGGTTCATATAATACTAGGGTTTTGTAA 3759 40.49 MEGAAADSSDSSLHHDLPFTPPEAAEDNYYSDSELFRVSLTEAPILLLIKFHQALRLEVADLRRVTLAAAESGGYGGEFVSGLIRRVEFLKLAYKYHCAAEDEVVFPALDLHTKNVISTYSLEHESLDGLFTSISKLCEDINGENKDISKPFQELIFCLGTIQTTICQHMIKEEQQVFPLLMKEFSAREQASLVWQFICSVPMILLEELLPWMMSFLPADQQSEVVNCLRDVVPNEKLLQEVIMSWLGSTEKPWRDVEVEDIKLQSSQENGQSPVDSLHIWHGAIMKDLKEVLKCLFQVKSCTSTALSNLDTLLVQIKFLADVILFYRKASEKFFCPVFNQRSDVCLTTSDQSFLSDGHIEGLQQLLQHGAQDTIPLSIFLEKLCWDMESFVIRVSKQFTFQETKVLPVIRKSCSHKTQQQLLYLSLRTLPLGLLKCIITWFSAHLSEEELRSVLQAKSEGNFQVNNALVALLHDWFRIGYSGKTSVEQFGQDLQQIFKTRSYILDKQVEQMKEVAGTSSLSSNAQFYKGENSEEMGLLSTNKDKSFMSNSSPTVSCTAPAYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEGRPHSAFNQPKPIDLIFFFHKALKKELDYFVLGSAKLVEHVGILTEFRRRFQLVKFLYQIHTDAEDQIAFPALEKKGKFQNISYSYTIDHKLEVHQFSKISFVLSEMSELHSSNFYVNADRKIFSHRQLCLELHDMCKSLHKSLSDHVDREEIELWPLFREFFTIDEQETLIGAIFGRTKAEILQDMIPWQMSYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHENVAAEVKTITPLLTSDPLEIISKYLSKEVTDVCEGNLFGKTISSTQKEHQFHVTNADKTEMFILNDEAKDFDGDQHDETFEESTKLVSHGVGDRDADGITEHETEKEQPDEGKKSSQNDHLLTISQEELEAVIRRVSRDSSLDSKSKSHLIQNLLMSRWIAKHHSQVEINITSENQGYAGQYPSYRDSLKKEFGCKHYKRNCKLLAPCCNQLYTCIHCHDEATDHSLDRKTITKMMCMNCLVVQPIRKTCSTLSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHICREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFKMLDAFLAEEKIPEEYSGKTQVILCNDCEKRGTAPFHWLYHKCSYCGSYNTRVL* 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1326160 1333097 + CsaV3_1G002060.1 Csa01g00206 514703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00206 1252 Pfam Ring finger domain 1144 1187 IPR001841 -
Csa01g00206 1252 Gene3D - 1217 1252 - -
Csa01g00206 1252 SUPERFAMILY Zinc hairpin stack 1083 1137 IPR037275 -
Csa01g00206 1252 Pfam Zinc-ribbon 1193 1250 IPR039512 -
Csa01g00206 1252 CDD RING-H2_Pirh2 1145 1188 - -
Csa01g00206 1252 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 255 1252 - -
Csa01g00206 1252 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 36 252 - -
Csa01g00206 1252 CDD Hr-like 606 749 - -
Csa01g00206 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1139 1190 IPR013083 -
Csa01g00206 1252 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 36 252 - -
Csa01g00206 1252 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 255 1252 - -
Csa01g00206 1252 SUPERFAMILY CHY zinc finger-like 1008 1073 IPR037274 GO:0008270
Csa01g00206 1252 Pfam Hemerythrin HHE cation binding domain 48 181 IPR012312 -
Csa01g00206 1252 ProSiteProfiles Zinc finger CHY-type profile. 1010 1079 IPR008913 GO:0008270
Csa01g00206 1252 MobiDBLite consensus disorder prediction 895 941 - -
Csa01g00206 1252 Pfam CHY zinc finger 1017 1092 IPR008913 GO:0008270
Csa01g00206 1252 CDD Hr-like 47 179 - -
Csa01g00206 1252 MobiDBLite consensus disorder prediction 895 939 - -
Csa01g00206 1252 ProSiteProfiles Zinc finger RING-type profile. 1146 1188 IPR001841 -
Csa01g00206 1252 Gene3D nmb1532 protein domain like 599 770 - -
Csa01g00206 1252 Gene3D nmb1532 protein domain like 47 199 - -
Csa01g00206 1252 SMART ring_2 1146 1187 IPR001841 -
Csa01g00206 1252 SUPERFAMILY RING/U-box 1133 1193 - -
Csa01g00206 1252 ProSiteProfiles Zinc finger CTCHY-type profile. 1082 1145 IPR017921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00206 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 2540.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00206 Csa-Chr1:1326160 Csa05g02629 Csa-Chr5:27419065 1.11E-12 dispersed
Csa01g00206 Csa-Chr1:1326160 Csa01g00396 Csa-Chr1:2454211 1.22E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g299 Blo04g00831 . Bda06g00810 Bda15g00514 Bpe12g00694 . . Bma12g01234 . . Cma10g00305 Cma11g00284 Car10g00290 Car11g00258 . . Cpe04g01394 . . . . . . . Cla06g01457 Cam06g1609 Cec06g1671 Cco06g1665 . . . . . Cone13ag0306 . . . . . Blo13g00170 Blo15g00066 . . Bpe07g01039 Bpe15g00528 Bma03g00898 Bma08g00059 . Cmo10g00326 Cmo11g00287 . . . . . Cpe18g00810 . . . . . . . . . . . . . . Lsi06g01320 Csa01g00206 Chy02g02353 Cme02g01729
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00206 Csa_Chr01 FPKM 17.361111 18.274218 65.421783 57.110512 2.465581 1.256051 2.522472 185.359222 176.291367 218.623093