Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00207 ATGGCGCGGAAGAAGAAGAACACTGATCCGCGTCAAGGAGTCGCTGGTGAGGGTCCAAGTGAAGCGACCGCTGCCGGAAAGAGTTCAGTATCTGATAAGCCGAGCAGTCAAAATCAAAGTAGGATCGACAGGGTGGTTGTCAAGGAATCGGATGAAGGTCTGTCGTATTCCGCAATTAAACTCGAATGTGAGAAGGCTCTTACTGCACTTCGGCGCGGAAACCACACTAAGGCACTCAGGCTTATGAAGGAGTTGAGTTCAAGAGATGAGAACTCTGTTCACTCGGCACTGATTCATCGCGTTCAGGGTACTCTTCTTGTAAAAGTTGCGTCGATTATTGATGACCCGAGTACAAAGCAGCGGCATTTGAAAAATGCGATTGAGTCGGCTCGGAAAGCTGTCCAGCTCTCACCAGACTCAATTGAATTTTCACATTTCTACGCAAATTTGCTTTATGAGGCCGCAAATGATGCAAAGGAGTACGAAGAGGTTGTGCAAGAGTGTGAGCGGGCCTTGGTAATTGAAAATCCTATCGATCCTGCCAAAGAAAGTTTGCAAGACGAACAGAATCAGAAAATACCTACTGCCGAAGGCCGAATTACACACGTTCAGACGGAATTGAGGCAGTTAATTCAAAAATCGAGTATATACTCTATATCATCTTGGATGAAGAATTTAGGTAACGGGGAAGAGAAGTTCAGATTGATTCCCATTAGAAGAGTGACAGAGGACCCAATGGAGGTGGGGATGGTTCAGGCTAGAAGGGCAAACGAAATCAAGAAAGCAACCAAAACGCCTGAAGAGCGAAGGAAGCAAATTGAAGTCCGTGTTGCTGCTGCAAGGCTGATGCAACAACAGTCTGAGTCACCTCCAATGCAGGATGAAGGAAGTAAAGCTGATCGGACCACCCCGGATTCATCTTCAGGGTCTGTTCGGACTCAGGATACATCTTCAGGGTCTGTTCGGACCCAGGATACACCACCAGGGCCTGTTACAAGGGTTGTTGAGCGGCGGAAACATGGTGGTAGTGTGCGGAAACTTGGCTCTTCAGCTGAAAGAAAGAATTGGGTTTATTCTTTGTGGAATTCTATGAGTTCAGAATCAAAGAAAGATGTGCTTAAGATCAAGACTAACGATCTTGAGACTCACTTTAGTTCTTTAAAGGATACCTCGGCAAATGAATTTATTTCAGAAGCCTTGTCTTTTTATGACGCCAATAAAACATGGAAATTTTGGGTTTGCTGCAAATGTGATAAGAAATTTGTCAATTCAGAATCCCATATGCACCACGTGGCTCAAGAGCACTTGGGCAACCTTTTGCCGAAAATGCAATCTATGTTGCCACACAATGTCGATAATGATTGGAGTGAAATGCTTCTCAATTGCCCTTGGAAACCATTGGATGTTTCAGCTGCAACCAAAATGTTCACAGATCAAACTAAATGCAAAGATTCTGAGTTCGTTGAAGATATGTGCCCACAACGTCATTCAGAATGTGATGAGTGTATCAAAGATGCATGGGATTTTTCTCCAGAGAAGCAGGATCATGAGAATAGTTTAAATGAATCCAAACTTTATGAAAAAATTAACAACAGCGGATATCCAATACCTGATAGTTTTCCAGTATCTGATGACTCTGAGCGTGCAAAGCTTCTTGAAAAAATTCATGCGGTATTTGAGTTACTTATTAAACATAAATATCTTGCTGCAAGCCAGCTAAACAAGATTATACAATTTACCATGGATGAGCTACAGGGTATTGTTTCTGGATCTCATCTTCTAAAGCAGGGTCTAGATCAAACACCACAATGTATTTGCTTTCTAGGTGCTTCCCAGCTTAGGAAAATCCTTAAGTTTTTGCAAGAATTATCTCAGTCTTGTGGTGTAGGTAGATACTCTGATAGAAGTACCGATCAAATTGAAGATTCAAAGAGTGACAAACAATCTGTTGATGTCGAAGAGAGAATTGTTTTTAATGGAGATGCATCACTTCTACTCCTTAACGAGTGTTTGTTATCTTCTAAAATCTCTCATGTCAGTGATCAGATGCCTGCTGCAAGTGAGGTTAGTTCTGACGTTGATCCTTTCCTAGCATGGATATATGCAAGTCCCTCTAGTGGTGACCAATTAGCATCATGGGCAAAAACAAAAGAGGAAAAGAAACAAGGGCAAACAGAAAACTTTCAATCGCTTGAGAAGGAATTTTACCAACTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCATTGCAGTCAGTGGAGGATCTTTGCCTTGAAGAGGGCAAGAAGAGAGAAGTTATAACTGAATTTATCCCCAAAAGTTATGAGTCAATCCTGAGGAAGCGAAGAGAGGAGCTTATTGAGTCTGAAAATGATGCGATGTACATAGGCAGTAGGTTTGAGTTGGATGCTTTAACTAATGTTTTGAAAGAAGCTGAAGCTCTGAATGCTAATCAACTTGGATATGGGGAAAATTTTGCCAGTGTGCCTTCTCAGTTATATGATTTGGAATCTGGTGAAGATGAAGGTTGGAGGGCTAAGGATTATTTGCATCAAGTTGATACTTGTATTGAAATTGCAATAAAGAGACAGAAGGAACAACTATCTATTGAGATTAGCAAAATTGACGGACGCATCATGCGAAATGTTACTGGAATGCAAGAGTTGGAACTTAAGCTGGAGCCTGTTTCGGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGAATTGGCTGAAATAGATGTCACGAAGAAGTCTGATGCTGCGAGAGAAGCATTTTTAGCTGAACTGGAACGAGATTCAAAAAAGGATAGCAAAGGTGGAAGTGATAATCCTAAACATGCACGTGAAAAGTCGAAGGAAAAGAAAAAGAGCAAAGAGTTTAGGAAAGCCAAGGACTCTAAGTTGGTCAGTGTTCGTGAGCAAAATGTGCCTCATGATGAGGTTGTCGATAGAGATACCTTTCAAGTTCCATCTGATGGTGATGTTGCAGAGGTGGATATTGCTGTTAGTGAGAACTCTGATGCTTTAAGACTAGAAGAGGAAGAGATAAGACGCAAAATCGAGCTAGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAAGGAGGCTAAACAAAAGCATTTGGCTGAACTACAAAAGAAATCTGCACAGACAAATCTAAAGAAGACAGTTGATCCGGCAGTACCTGAAAATCCCATTGGACTCACCCCCAGTGTTGAGGGTGTTCATGAGCGTTTTAAGCCTTCTGTGGTGGATCAAGTGGCAGAAAATGAATTGGTTCCTGACTCTTCTAGTACGGCAAGTGCTTCTTCAGGTGCATCCAATGTAGAAAATTCAGATACTAGCCTGCGATCGTCTGATAGGAGGAAGGGTAGGAGAGGTAGACGACAGAAGGGTGTAACCAAACCAGTTGATGGAAATCAATCTTCACATTCTGACAAGGATAATGTAGCCTTTGATAGCCAATTGATTGAGCAAGTTAGATATCATGACAGTCTCCCAGTAGATAGTGTTAATCCCCGTTCTGAAGATAATAGTGCGAAGACTTTAAGACAACAACATGCAGAGGATGATGAGAAACAATTTCAAGCTGACCTTAAGAAGGCTGTGCTCGAGAGCCTTGATGCATTTCAAGAAAAGCAGAACTTTCCAAGTTCTAGTACACCATCGACCAGTCGTGGTGAAGTAGATAGTACCGATCTTCCATCAAATGAACACAATGCAGGCAATGTGCAGGGAGCAGATATTTGTGGTACAGGACTTAAGAATGAAATTGGTGAATACAATTGCTTTCTGAATGTCATTATTCAGTCCTTATGGCATTTACGACGGTTTCGAGTAGAGTTCCTGAGAAGATCTAAGATCGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGATATCTTCACTGCCTTGAGCATGGCATCTGCAGATGCTAGAAGAGAAGCAGTTGCCCCCACTTCTTTGAGAATAGCTCTGAGTACTCTTTGTCCTGATAATAAATTTTTCCAAGAGGGCCAAATGAACGACGCCTCTGAAGTGCTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTACTAGTTTGAGCATTTCTGATACAGAATCAGTAGAAAGCAATTGCATGGGCTCGTGGGACTGTGCAAGTGACACTTGTTTGGTACATTCCATCTTTGGCATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTAAAGTACACTACCTTCTTTCACAATATAAATGCTAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGTTGCGGAAAGCTCAATTACATTCATCACTTTCTCGCTGCACCACCACATGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGTGAGAGTGCTGATGACATAACAGCAACATTAGCTGCTCTGAATACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAGTACACATAACTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAAAGTATGATGATAGAACTGTTAAGGTAATTGGTGGCTGGCTTGATGTCCTTACCATGTGCGAAAAAGGACATTTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4827 41.66 MARKKKNTDPRQGVAGEGPSEATAAGKSSVSDKPSSQNQSRIDRVVVKESDEGLSYSAIKLECEKALTALRRGNHTKALRLMKELSSRDENSVHSALIHRVQGTLLVKVASIIDDPSTKQRHLKNAIESARKAVQLSPDSIEFSHFYANLLYEAANDAKEYEEVVQECERALVIENPIDPAKESLQDEQNQKIPTAEGRITHVQTELRQLIQKSSIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVGMVQARRANEIKKATKTPEERRKQIEVRVAAARLMQQQSESPPMQDEGSKADRTTPDSSSGSVRTQDTSSGSVRTQDTPPGPVTRVVERRKHGGSVRKLGSSAERKNWVYSLWNSMSSESKKDVLKIKTNDLETHFSSLKDTSANEFISEALSFYDANKTWKFWVCCKCDKKFVNSESHMHHVAQEHLGNLLPKMQSMLPHNVDNDWSEMLLNCPWKPLDVSAATKMFTDQTKCKDSEFVEDMCPQRHSECDECIKDAWDFSPEKQDHENSLNESKLYEKINNSGYPIPDSFPVSDDSERAKLLEKIHAVFELLIKHKYLAASQLNKIIQFTMDELQGIVSGSHLLKQGLDQTPQCICFLGASQLRKILKFLQELSQSCGVGRYSDRSTDQIEDSKSDKQSVDVEERIVFNGDASLLLLNECLLSSKISHVSDQMPAASEVSSDVDPFLAWIYASPSSGDQLASWAKTKEEKKQGQTENFQSLEKEFYQLQNLCERKCEHLNYEEALQSVEDLCLEEGKKREVITEFIPKSYESILRKRREELIESENDAMYIGSRFELDALTNVLKEAEALNANQLGYGENFASVPSQLYDLESGEDEGWRAKDYLHQVDTCIEIAIKRQKEQLSIEISKIDGRIMRNVTGMQELELKLEPVSAHDYQSILLPLVNSYLRAHLEELAEIDVTKKSDAAREAFLAELERDSKKDSKGGSDNPKHAREKSKEKKKSKEFRKAKDSKLVSVREQNVPHDEVVDRDTFQVPSDGDVAEVDIAVSENSDALRLEEEEIRRKIELEADERKLEETLEYQRRIEKEAKQKHLAELQKKSAQTNLKKTVDPAVPENPIGLTPSVEGVHERFKPSVVDQVAENELVPDSSSTASASSGASNVENSDTSLRSSDRRKGRRGRRQKGVTKPVDGNQSSHSDKDNVAFDSQLIEQVRYHDSLPVDSVNPRSEDNSAKTLRQQHAEDDEKQFQADLKKAVLESLDAFQEKQNFPSSSTPSTSRGEVDSTDLPSNEHNAGNVQGADICGTGLKNEIGEYNCFLNVIIQSLWHLRRFRVEFLRRSKIEHVHVGDPCVVCALYDIFTALSMASADARREAVAPTSLRIALSTLCPDNKFFQEGQMNDASEVLAVIFDCLHQSLTTSLSISDTESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTTFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLAAPPHVFTTVLGWQNTCESADDITATLAALNTEIDISVLYRGLDPKSTHNLVSVVCYYGQHYHCFAYSHDKKCWIKYDDRTVKVIGGWLDVLTMCEKGHLQPQVLFFEAVN* 1609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1333655 1345244 - CsaV3_1G002070.1 Csa01g00207 514704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1234 1265 - -
Csa01g00207 1608 Coils Coil 151 171 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1203 1218 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 24 43 - -
Csa01g00207 1608 PANTHER UBIQUITIN SPECIFIC PROTEINASE 45 1608 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 332 347 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1158 1172 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1186 1218 - -
Csa01g00207 1608 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 45 1608 - -
Csa01g00207 1608 Coils Coil 714 734 - -
Csa01g00207 1608 Pfam Protein of unknown function (DUF629) 358 864 IPR006865 -
Csa01g00207 1608 Pfam Ubiquitin carboxyl-terminal hydrolase 1276 1583 IPR001394 GO:0004843|GO:0016579
Csa01g00207 1608 Gene3D Cysteine proteinases 1261 1608 - -
Csa01g00207 1608 ProSitePatterns Zinc finger C2H2 type domain signature. 414 435 IPR013087 -
Csa01g00207 1608 CDD Peptidase_C19 1367 1605 - -
Csa01g00207 1608 SUPERFAMILY Cysteine proteinases 1275 1605 IPR038765 -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1115 1137 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 947 988 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 283 348 - -
Csa01g00207 1608 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1275 1607 IPR028889 -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 302 327 - -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1115 1172 - -
Csa01g00207 1608 Gene3D Tetratricopeptide repeat domain 55 192 IPR011990 GO:0005515
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1071 1096 - -
Csa01g00207 1608 Pfam Protein of unknown function (DUF627) 66 175 IPR006866 -
Csa01g00207 1608 MobiDBLite consensus disorder prediction 1 44 - -
Csa01g00207 1608 Coils Coil 1028 1048 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00207 - - csv:101212702 3142.83