Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00210 ATGGAAGAAAAGGGAGAGAAGCCTGAGGTTTTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACTACAGCAGCTGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAAGTACTGAAGTTTTTGGGTTTTATGTGGAACCCCTTATCATGGGTAATGGAGGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAGGATTTTGTTGGTATTATCGCCCTGTTGCTTATCAACTCAACAATTAGTTTCATTGAGGAAAATAATGCCGGAAACGCTGCAGCTGCGCTAATGGCCAGTTTAGCTCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGTGTACAAGATGCGTCGGTTTTAGTTCCTGGTGATATTATAAGTATCAAACTTGGGGATATTATTCCAGCTGATGCACGTCTTCTGGATGGGGATCCGTTGAAAATTGACCAGTCTGCACTTACAGGCGAGTCTCTTCCTGTTACTAAAGGTCCCGGCGATGGCATATACTCTGGTTCTACTTGTAAACAAGGAGAGATTGAAGCGGTGGTCATTGCCACTGGTGTTCATACTTTCTTTGGTAAGGCTGCCCACCTTGTTGACACCACTAACCAAGTGGGACACTTCCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCCATTGCTTTGGGCATGATTACAGAAATTATTGTCATGTACCCCATCCAAGATCGTGACTATCGTCCTGGAATTGACAATCTTCTTGTGCTTTTGATCGGAGGAATTCCAATTGCCATGCCCACAGTTCTCTCTGTGACAATGGCTATCGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCAATTGAAGAAATGGCAGGAATGGATGTGCTTTGCAGTGACAAGACAGGAACACTGACACTAAACAAGCTAACTGTCGACAAAAATCTTGTTGAGGTTTTTGCTAAAGGAGTGGATGTCGATACAGTGGTTCTTATGGCAGCCCGGGCATCAAGAACAGAGAATCAAGATGCTATTGATACTGCCATTGTTGGGATGCTTGCTGACCCAAAAGAGGCTCGTGCTGGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACTGATAAGCGGACTGCATTGACTTACATAGACCATGAAGGTAAAATGCATAGAGTCAGTAAAGGGGCACCTGAGCAGATTCTGAACCTTGCGCACAATAAGTCAGAGATCGAGCGTAAAGTTCATGCTGTGATAGACAAGTTTGCAGAACGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTCGAAAGGAGAGTGCTGGAGGTCCATGGCAGTTTGTTGGCCTCCTGCCACTGTTCGACCCACCAAGGCATGACAGTGCAGAGACAATAAGGAGGGCATTAAATCTTGGAGTGAATGTGAAGATGATTACTGGTGACCAGCTGGCCATTGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTGTTAGGACAGGACAAGGACGAGTCTATTGCTGCTTTACCTGTAGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGCGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCAAGGAAACATATCTGTGGAATGACTGGCGATGGAGTAAATGATGCTCCTGCCCTTAAAAAAGCTGACATAGGGATAGCTGTTGCTGATGCTACTGATGCTGCTCGCAGTGCTTCAGACATAGTCCTTACAGAGCCTGGTTTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGTGCTATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCATTTATGGTGCTTATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCAAAGGATAGAGTAAAACCGTCTCCTTTGCCTGATAGCTGGAAACTGGCTGAAATTTTCACAACTGGCATTATACTTGGCGGTTACTTGGCAATGATGACTGTTATCTTCTTTTGGGTGGCCTATAAGACAAACTTTTTTCCACGAATCTTTGGGGTAGCAACTCTCGAGAAAACTGCTCATGATGACATAAGGAAATTGGCCTCAGCAGTGTATCTTCAAGTAAGCACTATAAGTCAGGCTCTCATATTTGTTACTCGCTCTCGAAGTTGGTCTTTCGTGGAACGTCCTGGGTTATTACTGGTTGCAGCTTTTCTGGTTGCACAGCTGGTGAGTGGGCTTTCATTAAACTTCAGTATAGATTTTTGTATAGGTATGATTAGAACTGAGCTGGTATTTCTCCCTCTTGAACAGATTGCTACTTTAATTGCGGTTTATGCAAACTGGGGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCCGGTGTTATCTGGCTTTACAACATTATCTTTTACATCCCACTTGATCTCATTAAGTTCTTTATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAGAGGATTGCCTTCACGAGACAAAAGGACTTTGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCGCAAAGAACATTACACGGATTGCAAGCACCCGATGCCAAAATGTTCCACGACCGAACTCATTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTACACACCTTGAAAGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGACTTGACATTGACACAATTCAGCAAGCTTACACGGTATGA 2964 44.5 MEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDIISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMITEIIVMYPIQDRDYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWVAYKTNFFPRIFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFLVAQLVSGLSLNFSIDFCIGMIRTELVFLPLEQIATLIAVYANWGFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV* 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1358816 1365007 + CsaV3_1G002100.1 Csa01g00210 514707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00210 987 Gene3D - 936 987 - -
Csa01g00210 987 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
Csa01g00210 987 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Csa01g00210 987 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Csa01g00210 987 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Csa01g00210 987 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Csa01g00210 987 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Csa01g00210 987 Coils Coil 938 958 - -
Csa01g00210 987 SUPERFAMILY HAD-like 330 640 IPR036412 -
Csa01g00210 987 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Csa01g00210 987 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
Csa01g00210 987 Gene3D - 137 221 - -
Csa01g00210 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 884 IPR023298 -
Csa01g00210 987 CDD P-type_ATPase_H 39 878 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa01g00210 987 SFLD Haloacid Dehalogenase 316 644 - -
Csa01g00210 987 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00210 987 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00210 987 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00210 987 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00210 987 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00210 987 PANTHER CALCIUM-TRANSPORTING ATPASE 6 812 - -
Csa01g00210 987 PANTHER CALCIUM-TRANSPORTING ATPASE 829 967 - -
Csa01g00210 987 PANTHER PLASMA MEMBRANE ATPASE 1 6 812 - -
Csa01g00210 987 PANTHER PLASMA MEMBRANE ATPASE 1 829 967 - -
Csa01g00210 987 Gene3D - 346 493 IPR023299 GO:0000166
Csa01g00210 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 568 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00210 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 106 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g00210 987 Gene3D - 331 630 IPR023214 -
Csa01g00210 987 Pfam E1-E2 ATPase 135 313 - -
Csa01g00210 987 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 39 811 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa01g00210 987 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
Csa01g00210 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Csa01g00210 987 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Csa01g00210 987 Gene3D - 99 813 - -
Csa01g00210 987 SFLD p-type atpase 316 644 IPR044492 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00798 Csa01g00210 CCT
Csa01g00798 Csa01g00210 ECH
Csa01g00210 Csa01g00798 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00210 Csa-Chr1:1358816 Csa02g02323 Csa-Chr2:20671660 0 dispersed
Csa01g00210 Csa-Chr1:1358816 Csa01g00798 Csa-Chr1:5041399 0 wgd
Csa01g00210 Csa-Chr1:1358816 Csa05g02967 Csa-Chr5:29999659 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00210 K01535 - csv:101217264 1801.95