Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00213 ATGGGTCTTTTCATTTGGGTCTCATCCTTCATTTTAGTAGCTACCCTTTTAAGCAAATGCTCTTTTTCTCTCACTGAAGATGGTTTAACATTGTTGGAAATCAAAAGTACTTTAAATGACACTAAGAACGTGCTCAGTAATTGGAGCCCTGCAGATGAAACTCCCTGTAAATGGACTGGTATCTCTTGCCATCCTGAGGACTCTCGTGTCAGCTCAGTTAATCTTCCGTTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAACGGCTTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCCTGTACTTGAGGGCTAATTATCTTCAAGGAGGCATTCCATCAAATATTGGAAACCTTTCATACCTTACCATACTTGATTTATCATGCAATTCCTTTAAGGGTAGTATACCATCATCGATTGGTCGTCTCACACACTTGCGGAATCTGAATTTATCTACCAACTTCTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGTAACAACTCATTCTTTGGTAATCAAGGTCTTTGTGGTCGACAAGTTAACAAGCCGTGCCGAACCTCACTGGGTTTTCCTGTCGTTTTACCACATGCTGAAAGTGATGAAGCAGCAGTTCCTCCTAAGCGATCCTCTCATTACACCAAAGGACTGTTGATTGGTGCAATATCAACAGCAGGGTTTGTGTTGGTCATACTTGTTGTATTCATGTGGACTCGTTTGGTGTCAAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAATCGTGATACAAGTGCAAAGCTTATTACATTCCATGGGGATCTACTATATCCAACATGTGAGATCATAGAAAAGCTGGAGGCCCTGAGTGAAACAAATGTTGTTGGCTCAGGAGGTCTTGGAACCGTGTATCGAATGGTCATGAATGACTCCGGAACTTTTGCTGTGAAGAAAATTGATAGGACTCAAGACGGTCCAGATCAAGTAGTTGAAAGAGAACTGGAGATACTGGGTAGCATTAAACACATAAATTTAGTGAAATTGCGTGGCTATTGCAGGCTTCCTTCTTCAAAGCTTCTTATATATGACTATCTGCCGGCTGGTAGCTTGGATAATTTCTTGCATGAACGTGGACCAGAAAAGTTATTGGATTGGAGTGCTCGGTTAAACATAGCCCTAGGCTCTGCTCGAGGACTGGCATACTTGCACCATGATTGCTGTCCAAAGATTGTGCATTGCAACATAAAATCCAGCAACATCCTTCTTGACGGGAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCGGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATTTGGCTCCAGAATACTTAGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCAAGTGATCCATTTTTCTCAAAGAGGGGTGTAAATATCGTTGGTTGGTTGAACACACTGCGGGGAGAAGACCAATTGGAGAACATAGTCGATAATAGGTGCCAGAATGCAGATGTCGAAACGGTAGAAGCGATTCTCGAAATAGCAGCGAGGTGCACCAATGGCAATCCAACTGTGCGGCCTACAATGAACCAAGTATTGCAGCAGCTAGAGCAAGAGGTGATGTCGCCGTATCCAAGCGATTACTCTGAGTCTCACTCGGATTATTCGTGA 1803 42.87 MGLFIWVSSFILVATLLSKCSFSLTEDGLTLLEIKSTLNDTKNVLSNWSPADETPCKWTGISCHPEDSRVSSVNLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNIGNLSYLTILDLSCNSFKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNNSFFGNQGLCGRQVNKPCRTSLGFPVVLPHAESDEAAVPPKRSSHYTKGLLIGAISTAGFVLVILVVFMWTRLVSKKERTAKSYMEVKKQKNRDTSAKLITFHGDLLYPTCEIIEKLEALSETNVVGSGGLGTVYRMVMNDSGTFAVKKIDRTQDGPDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLPAGSLDNFLHERGPEKLLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVDGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCQNADVETVEAILEIAARCTNGNPTVRPTMNQVLQQLEQEVMSPYPSDYSESHSDYS* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1379747 1383221 + CsaV3_1G002130.1 Csa01g00213 514710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00213 600 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Csa01g00213 600 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Csa01g00213 600 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Csa01g00213 600 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 592 - -
Csa01g00213 600 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Csa01g00213 600 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 592 - -
Csa01g00213 600 SUPERFAMILY L domain-like 25 186 - -
Csa01g00213 600 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00213 600 SUPERFAMILY Protein kinase-like (PK-like) 289 581 IPR011009 -
Csa01g00213 600 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Csa01g00213 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00795 Csa01g00213 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00213 Csa-Chr1:1379747 Csa02g01758 Csa-Chr2:17156879 1.23E-103 dispersed
Csa04g00228 Csa-Chr4:1372960 Csa01g00213 Csa-Chr1:1379747 3.73E-44 transposed
Csa04g00692 Csa-Chr4:4698595 Csa01g00213 Csa-Chr1:1379747 0 transposed
Csa04g02246 Csa-Chr4:23097432 Csa01g00213 Csa-Chr1:1379747 1.02E-93 transposed
Csa04g02769 Csa-Chr4:26547824 Csa01g00213 Csa-Chr1:1379747 0 transposed
Csa06g00777 Csa-Chr6:6242040 Csa01g00213 Csa-Chr1:1379747 1.52E-44 transposed
Csa01g00213 Csa-Chr1:1379747 Csa01g00795 Csa-Chr1:5031577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77735 PF00069 Pkinase 2.00E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00213 - - csv:101217728 1175.23