Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00218 ATGGAGGCTCAACAAGCTTTGGCAACCATTGATGATGACAGAGTTCAATCAACTGGAGAAGGAGATGATAAACAAGCTTCTCCTAATCCTAAACAACATATTCATCTTAAGGTCCCTTCTATGGGTGACTTGGAAAAGCCTTCCATGGAAAATCTTTCAGTCCCATCAGCTTCTAATTCAATAACTTGGAAGGAAGAGGATGATGAGCAACGTCATGAAGAAAGAATGAAAAGGACGAAAGTTGAAATGAGGGAAGTAAAGGAAGAAAACGAGAGGTTAAAGAAATATTTGGATGAAATAATGAAAGATTATGAGACATTGAAAAGGAAATTCCATGAGATTAAGAATAATCATGATGATCAAATTAGAGAAGAAGGCAAAAAATCAACACAAACAAGTGGAAGTACAATAAATAATAATAATAATGATAATGATGACGATCATCAAGTTGAAGCTGAAGTTGATGACATGGTTTCACTCAGATTAGGATCAAGATTCTCAACCCATCATCAAAACAAGAACACTTCTTCTTCTTCCTTATCTCTAACTAATAAGATCTTAGATCTCAAACAAGATTATGTTATTCAAACCCCATCAACTATTGATCACAGTATTCATAGTCCAACCCACAGCGAACCTAAAGATCAGGAAGAAGCCGGACAGACGACTTGGCCGCCGAGTAAAATGCCGAAGCCTGGCGGTTTGCCCTCACCTGCTACCGGAGAAGATGAAGTTTCTCAACAGAATCCTCCTAAGAAAGCTAGGGTTTGTGTTAGAGCTCGATGTGATACTCCAACGATGAACGATGGATGTCAATGGAGAAAATATGGACAAAAGATAGCAAAAGGAAATCCATGCCCTAGAGCTTATTATCGATGCACGGGTGCACCCACTTGTCCCGTTAGAAAACAAGTACAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCCGCTGCCGCTTCCATGCTACTCTCGGGCCCTTCCTCCTCCACCTCCTCCCAACCTGGCCTAAACCATTCATTTACCGCTCCTGCGACTGCTGCGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTATTTGCCAAACTCTTCAATGCTATCTTCCTCTCTAAACCATCCCACAATCACTCTAGATCTCACTTCAAATCCTCCTTCAACTTCCTCCTCTTCTCCTTTCCATAAAATCCCTTTAATTAATAACAATAATTATCCCCCAAAATATCCCTTCACAAATCTTGACTTTGCCTCTTCACAGCCCAATTTCATGTCTTGGAATAATAACAATAATGCTTATAGTAATATTACCAAAAACAATGCAATAATAGGAATGGGATCGGATTTTGCTAAACAACTTCCTCTTCATACTAACATCTACCAAGCTTGTCTTCAACAACTTTCTAAACCTTCAACGACTCCCCAGCCACCAGCTCTACCAGATACGATAGCAGCGGCAACTAAGGCAATTACATCAGACCCGAGTTTCCAATCGGCATTGGCGGCTGCGTTGAGTTCGATTATCGGAGGCGGGGAGACGGGTCCGAGTGTTTCTAGCTTAGTTGTTGGAGGAGGAGGAGGAGGAGGACAAGGAAGTATGGGGTTTGAGGCAGCTAAGTCGTTAACATGCTCTACTTCTAAGAGTACTCCTTCTTCATCTCCTGGGGATAGTAGAGATAATGGGAAGTGA 1773 41.34 MEAQQALATIDDDRVQSTGEGDDKQASPNPKQHIHLKVPSMGDLEKPSMENLSVPSASNSITWKEEDDEQRHEERMKRTKVEMREVKEENERLKKYLDEIMKDYETLKRKFHEIKNNHDDQIREEGKKSTQTSGSTINNNNNDNDDDHQVEAEVDDMVSLRLGSRFSTHHQNKNTSSSSLSLTNKILDLKQDYVIQTPSTIDHSIHSPTHSEPKDQEEAGQTTWPPSKMPKPGGLPSPATGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSTSSQPGLNHSFTAPATAANLHGMNMYLSNNTNSKQFYLPNSSMLSSSLNHPTITLDLTSNPPSTSSSSPFHKIPLINNNNYPPKYPFTNLDFASSQPNFMSWNNNNNAYSNITKNNAIIGMGSDFAKQLPLHTNIYQACLQQLSKPSTTPQPPALPDTIAAATKAITSDPSFQSALAAALSSIIGGGETGPSVSSLVVGGGGGGGQGSMGFEAAKSLTCSTSKSTPSSSPGDSRDNGK* 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1407016 1410875 + CsaV3_1G002180.1 Csa01g00218 514715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00218 590 Pfam WRKY DNA -binding domain 268 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00218 590 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 63 546 - -
Csa01g00218 590 SUPERFAMILY WRKY DNA-binding domain 260 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00218 590 MobiDBLite consensus disorder prediction 201 254 - -
Csa01g00218 590 MobiDBLite consensus disorder prediction 1 89 - -
Csa01g00218 590 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 63 546 IPR044810 GO:0003700
Csa01g00218 590 MobiDBLite consensus disorder prediction 62 89 - -
Csa01g00218 590 SMART WRKY_cls 267 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00218 590 Coils Coil 69 124 - -
Csa01g00218 590 MobiDBLite consensus disorder prediction 549 590 - -
Csa01g00218 590 MobiDBLite consensus disorder prediction 128 143 - -
Csa01g00218 590 MobiDBLite consensus disorder prediction 15 30 - -
Csa01g00218 590 Gene3D WRKY domain 252 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00218 590 MobiDBLite consensus disorder prediction 114 155 - -
Csa01g00218 590 MobiDBLite consensus disorder prediction 565 590 - -
Csa01g00218 590 ProSiteProfiles WRKY domain profile. 262 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00787 Csa01g00218 CCT
Csa01g00787 Csa01g00218 ECH
Csa01g00218 Csa01g00787 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00218 Csa-Chr1:1407016 Csa07g00347 Csa-Chr7:2571163 2.05E-49 dispersed
Csa01g00218 Csa-Chr1:1407016 Csa01g00787 Csa-Chr1:4979523 2.98E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30616 PF03106 WRKY 1.40E-23 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00218 - - csv:101213180 1029.62