Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00219 ATGGAAGAATCCATCAAGGACCAGCAATCTACTCCATTTCCTGGTAACGCAGCCAGACCCAAGCTTCAGCGCTATGCTTTGCGTTCGGGGAATAATAAATCTAAAGATGACAAGCTTCCTGCTCCTGAATTGTCGAATCCTCCTTCTTCTGCCTCAAAGAGGGGAAGATCTGTGTCCAGTGTGAGCAAAAGTGTTGGAGTCCTTGAACTATCTGCCAAGGACAAGTCCGCTAAACCACCAAGAAGGCTCTCTATACCAACTAAAAATCTAAGCCCGACTCGAAAATTAGTTGGCAACATTACACCAATATCAGAGGTCCGGAGAACTGCTAGGAGCCAGGGGAAAAGTGACACACCTGTTTCTGACTTTTCGCGGTCAAGCAAGAAAACATTCCACCTTTTATCTTCTACATCATATTGGCTATCGCAGATCAAGCTCTCTGAAGCTGCTTCTAAGCATTCAGTGTCGCTTGGATTCTTTAAGCTTGCATTGGAGGCAGGGTGCAAGCCTCTTCATCGGATGCGTGATGAACTCAAATCCTATATTAATCGTTGCAACCTTGATGAAAGTGAACAAACGGTGAAAGATTTGCTAGAAAACTACAATTCCGCACAAGAAACAGAGCAACTACAGGTCTCTGAATCCATTTCCCAGGGACCTGAAGTGGGAACAAGGTCTTCAGATGATGAAGTTCATAGCTCTTCATCCTCAGTAGAGCCTCGGAAGCTTAAACCAAAATCCTTAAACGCCGATGTCTCCAAAACTACCCCAGTCACTGAGGTCAATCAGAGAAATCTTACTACAACACCAAGAAACAGAGGAACTTGGAATAAAAATGTTGCCCCAAATTCAACTTCAGAGACAACGAAAAAATCTTTGAAGAAACCCCATAAGTCAAACAAGCAAGAACCCATTCAAGGAAAGGAAAAGACCAAGAAGCAAGGAAAGAAACAGCCCAGCGAGAAGGCTCCAGCTACCACAAGTCCTGAAGAAGATTCTGTGCAATCAAACAAAGAAAATTTGGAGGCTCCCCAAATTGAAGTGATTTCAACAGAACAATTAGTGATGTGA 1071 43.6 MEESIKDQQSTPFPGNAARPKLQRYALRSGNNKSKDDKLPAPELSNPPSSASKRGRSVSSVSKSVGVLELSAKDKSAKPPRRLSIPTKNLSPTRKLVGNITPISEVRRTARSQGKSDTPVSDFSRSSKKTFHLLSSTSYWLSQIKLSEAASKHSVSLGFFKLALEAGCKPLHRMRDELKSYINRCNLDESEQTVKDLLENYNSAQETEQLQVSESISQGPEVGTRSSDDEVHSSSSSVEPRKLKPKSLNADVSKTTPVTEVNQRNLTTTPRNRGTWNKNVAPNSTSETTKKSLKKPHKSNKQEPIQGKEKTKKQGKKQPSEKAPATTSPEEDSVQSNKENLEAPQIEVISTEQLVM* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1412611 1415674 - CsaV3_1G002190.1 Csa01g00219 514716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00219 356 MobiDBLite consensus disorder prediction 320 356 - -
Csa01g00219 356 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 1 351 - -
Csa01g00219 356 MobiDBLite consensus disorder prediction 1 94 - -
Csa01g00219 356 MobiDBLite consensus disorder prediction 290 319 - -
Csa01g00219 356 MobiDBLite consensus disorder prediction 45 66 - -
Csa01g00219 356 MobiDBLite consensus disorder prediction 249 289 - -
Csa01g00219 356 MobiDBLite consensus disorder prediction 225 248 - -
Csa01g00219 356 MobiDBLite consensus disorder prediction 205 356 - -
Csa01g00219 356 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 1 351 - -
Csa01g00219 356 Coils Coil 187 207 - -
Csa01g00219 356 MobiDBLite consensus disorder prediction 205 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00219 - - - csv:101218840 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00219 Csa-Chr1:1412611 Csa06g01678 Csa-Chr6:14698995 4.83E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g520 . . Bda06g00551 Bda15g00594 . . . Bma12g01002 . . Cma10g00181 Cma11g00160 Car10g00170 Car11g00140 Sed08g0200 . Cpe04g01512 Bhi02g00341 Tan09g2156 Cmetu02g0796 . Hepe09g0134 . . Cla06g01604 Cam06g1778 Cec06g1829 Cco06g1838 Clacu06g1740 Cmu06g1685 Cre06g2501 Cone2ag0859 Cone16ag0153 . . . . . . Blo13g00020 . . . Bpe07g00790 . . Bma08g00209 . Cmo10g00199 Cmo11g00150 . . . . . Cpe18g00804 . . . . . . . . . . . . . . Lsi06g01482 Csa01g00219 Chy02g02514 Cme02g01900
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003808 5 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 0 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00219 Csa_Chr01 FPKM 10.448598 12.019423 17.024157 14.06917 15.724531 14.51202 12.972491 35.084408 36.141338 32.572723