Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00220 ATGGAATTAAGAAGCGGATTTCCGCTTCTTCTTCAACAATACCGAGCATTATTAAAGAAGAATCTCTTACTTTCATTGCGGAACAAGAGAGCTACATTTCTTCATCTATTTTCCTCTCTCTTTTTCATTTTCCTCATTTTCTGTATTCAGAAAGCCACAGAATCTCGCTTTGGCTCCTCCAGTTCTATGAATGATGTTCGCAATCCTGAACTTCACTCTAACCCTTCCATTCCACCTTGTGAGGACAAGTATTACATAAAGCTTCCTTGTTATGATTTTGTGTATAGTGGTGACTCCAGCCCCAAGGTCCGCAGCATTGTCAGCGCTATTATGGCTAAAAATCCCGGCCGGTCCATTCCTGCGAATAAGGTTCTATCTTTTGGTACACCTGCTGAAGTTGATAAATGGCTTTTTAACAACCCTATGACTTGTCCTGGGGCCTTGCATTTCACTGAAAGAAATGGGACTGTGATTAGTTATGGTTTACAAACTAATTCTACTGCTGTGGCAAGGAGAGGACAGTACGAAGACCCCATATTTAAATTTCAAATTCCACTTCAGATAGCCGCAGAGCGCGAAATAGCTCGATTTTTTATTGGGGATCCCAACTTTAGCTGGGTTGTGAACTTCATGGAATTTGCACACCCTGCAGTGAACAAATTCTCTGCAGTGAATACTATTGGGCCAACATTCTTCCTAGCCATTGCTATGTTTGGCTTTGTGCTTCAAATTAGTTCCTTGATCACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACGATGATGGGTTTGTATGATACTGCATATTGGCTATCATGGCTCACATGGGAAGGAATTACGACACTCATTGCATCAATTTTCACAGTTCTATTTGGAATGATGTTTCAGTTTGATTTTTTCTCTAAAAACAATTTTGCGGTCGTGTTTCTTGTCTTCTTTCTCTTCCAACTCAATATGGTTGGATTTGCTTTTATGTTATCAGCCTTTATAAGCAAGTCGTCTTCATCTACTACTGTGGGCTTCTCCATATTTATTGTTGGATTTCTCACTCAGCTTGTTACTGGATTTGGATTTCCTTATGCAGATGGCATCTCAAAAGCTTACCAAATCATCTGGTCCTTGTTCCCGCCTAATCTTCTTGCAAAAGCTCTTTCTCTCCTCTCTGATGCCACTGCCACCCCAAGTGATCCAGGAATCAGCTGGAGTAGTCGCACAGAGTGTATTCCAAAGGGTTCTGAATGTGTCATAACTATAAATGAAATTTATTCATGGCTTGTGGGAACATTCTTCTTATGGTTTTTCTTGGCCATCTACTTCGACAACATCATTCCAAATGCCGCTGGTGTGAGAAAGTCAGCCTTTTACTTTTTGAGGCCAGGATATTGGACAGGGAAAGGAGGAAGTAAAGTTGAAGAGGGTGGAATCTTCAGTTGCTTGGGTTCACTTCCAGTATTGGAGCCTATTACTCCAGATGATGAAGATGTTCTTGAAGAGGAAAGCACAGTAAAACAACAACTTTCAAATGGAATAGTGGATCCAAATGTTGCGGTTCAAATACGTGGCCTAGCAAAAACATATCCTGGAGCTTGGAAGGTCAAGTTAGGTTGCTGCTGTAAATGCACTAAAACCTCTCCTTATCACGCTGTCAGGGGCTTGTGGGTGAACTTTGCAAAGGATCAACTATTTTGTCTTCTTGGACCAAATGGTGCTGGGAAAACCACATCAATCAGTTGTTTGACAGGGATTACACCAGTGACTGGTGGAGATGCATTAATATATGGAAATTCTGTTCGTGACTCTGTTGGCATGGCAAACATTCGGAAAATTATTGGTGTCTGTCCCCAGTTTGATATACTATGGGAAGTCTTGTCTGGGCAAGAACACCTCCATCTTTTTGCAACAATAAAAGGTCTACCACCATCTTCAATAAAGTCGATTGCGGAGAAGTCACTGGAAGAAGTAAAACTCACTCAGTCTGCAAAGACAAGAGCAGGGAGTTACAGTGGGGGAATGAAACGTCGGTTAAGTGTTGCCATAGCTCTTATTGGTGATCCAAAGTTGGTTATCTTAGATGAACCGACAACTGGAATGGATCCGATAACAAGGAGGCACGTTTGGGATATCATAGAGGGTGCAAAGAAAGGACGTGCCATTCTTTTAACAACACATTCAATGGAAGAAGCTGACATCTTAAGTGACCGCATTGGAATCATGGCAAAGGGAAGGCTCCGTTGCATTGGAACCTCAATCAGGTTGAAGTCAAGATTTGGTGCTGGCTTTGTTGCAAATGTTAGTTTTGACAATCACAACGGCGGACAGACCCCATCTCTTAATGGGGTACCGAATACCTCTGCCGGCTATGAAGAAATTAAGCAGTTTTTCAAATCTCGCTTGGATATTCTACCCAAGGAAGAGCATAAATCTTTTCTAACTTACATCATCCCTCATGACAGAGAAAAGCTTCTGACGAAATTCTTTGATGAACTTGAGGAGAGAAAGGGAGAGCTTGGAATATCGGATGTCCAACTCAGTCTTACTACCCTTGAAGAAGTTTTCTTGAACATTGCAAAACAGGCAGAGTTGGAAAGTGCTGCAGCTGATGGAACCATGATGTCACTGACTCTAATGGCATCCGGTGATACTCTTGAGATACCAGTAGGAGCAAGATTTGTGGGAATTCCAGGAACAGAGACCGCTGAGAATCCAAGCGGAGTAATGGTAGAAGTTTACTGGGAACAAGATGATTCAGGTTCTCTATGCATATCTGGTCACTCCGACGAAATGCCGGTGCCGCCTAACGTGCACCCACTGCCTTCTCTGAGAACCCTCTCTTTGAGATCAGCTTCACAAAGAAGCCGTTTTGGACAGACAGGTCCAGTTTATGGTATTGTGTATGAACCTGGACAAGTTACTGCTTACAATTCTGGTTGA 2931 42.34 MELRSGFPLLLQQYRALLKKNLLLSLRNKRATFLHLFSSLFFIFLIFCIQKATESRFGSSSSMNDVRNPELHSNPSIPPCEDKYYIKLPCYDFVYSGDSSPKVRSIVSAIMAKNPGRSIPANKVLSFGTPAEVDKWLFNNPMTCPGALHFTERNGTVISYGLQTNSTAVARRGQYEDPIFKFQIPLQIAAEREIARFFIGDPNFSWVVNFMEFAHPAVNKFSAVNTIGPTFFLAIAMFGFVLQISSLITEKELKLRQAMTMMGLYDTAYWLSWLTWEGITTLIASIFTVLFGMMFQFDFFSKNNFAVVFLVFFLFQLNMVGFAFMLSAFISKSSSSTTVGFSIFIVGFLTQLVTGFGFPYADGISKAYQIIWSLFPPNLLAKALSLLSDATATPSDPGISWSSRTECIPKGSECVITINEIYSWLVGTFFLWFFLAIYFDNIIPNAAGVRKSAFYFLRPGYWTGKGGSKVEEGGIFSCLGSLPVLEPITPDDEDVLEEESTVKQQLSNGIVDPNVAVQIRGLAKTYPGAWKVKLGCCCKCTKTSPYHAVRGLWVNFAKDQLFCLLGPNGAGKTTSISCLTGITPVTGGDALIYGNSVRDSVGMANIRKIIGVCPQFDILWEVLSGQEHLHLFATIKGLPPSSIKSIAEKSLEEVKLTQSAKTRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIEGAKKGRAILLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGAGFVANVSFDNHNGGQTPSLNGVPNTSAGYEEIKQFFKSRLDILPKEEHKSFLTYIIPHDREKLLTKFFDELEERKGELGISDVQLSLTTLEEVFLNIAKQAELESAAADGTMMSLTLMASGDTLEIPVGARFVGIPGTETAENPSGVMVEVYWEQDDSGSLCISGHSDEMPVPPNVHPLPSLRTLSLRSASQRSRFGQTGPVYGIVYEPGQVTAYNSG* 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1416507 1422320 - CsaV3_1G002200.1 Csa01g00220 514717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00220 976 Pfam ABC-2 family transporter protein 199 438 - -
Csa01g00220 976 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524
Csa01g00220 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 747 IPR027417 -
Csa01g00220 976 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 945 IPR026082 GO:0016021|GO:0055085|GO:0140359
Csa01g00220 976 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 765 IPR003439 GO:0005524
Csa01g00220 976 PANTHER ABC TRANSPORTER A FAMILY MEMBER 11 8 945 - -
Csa01g00220 976 Gene3D - 513 767 IPR027417 -
Csa01g00220 976 CDD ABC_subfamily_A 517 753 - -
Csa01g00220 976 Pfam ABC transporter 554 694 IPR003439 GO:0005524
Csa01g00220 976 SMART AAA_5 558 742 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00220 - - - csv:101219071 1877.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00220 Csa-Chr1:1416507 Csa02g01629 Csa-Chr2:15464609 3.17E-20 dispersed
Csa01g00220 Csa-Chr1:1416507 Csa01g00221 Csa-Chr1:1425089 1.05E-86 tandem
Csa04g01087 Csa-Chr4:8949968 Csa01g00220 Csa-Chr1:1416507 2.94E-58 transposed
Csa01g00220 Csa-Chr1:1416507 Csa01g00785 Csa-Chr1:4959845 3.51E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004576 2 1 3 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 8 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00220 Csa_Chr01 FPKM 12.175467 13.554013 13.888023 12.431812 18.254356 15.682998 19.547546 13.76438 13.65059 15.482706