Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00228 ATGGAAGGAGGTGATGAACTTCACCACCATCATCACCATCACCACCAGAATCACCACCACCAACACCAGCACCAACACCAACACCGTCCTACTTTCCCATTTCAATTACTTGAAAAGAAAGACGACGATGCTGCCTCTTGTTCTACTTCTCCTTACCCTTCTCTTGCTATCTCTGCCGACACGACTACTACTACGACTACGACCACAACCACGACCAGTTCAGTTGTTGCAGCAGAGACTTCTAAGAAGCCCCCACCAAAGAGAACTTCTACCAAAGACCGTCACACGAAAGTCGATGGACGGGGTCGTCGTATACGAATGCCGGCCTTATGTGCGGCTAGGGTATTCCAACTTACTAGAGAATTAGGCCATAAGTCCGACGGTGAAACCATCGAGTGGCTTCTTCAACAAGCGGAACCCGCTGTGATTGCTGCTACTGGAACCGGTACTATCCCGGCTAATTTCACATCGCTTAACATTTCGTTACGTAGCTCTGGTTCTAGTATGTCGGTTCCTTCACAGCTCCGATCTTCCTCTTATTACAACCCGAATTTCTCCCTTCATCAACAACGTCGAACCCTATTCCCGGGTTTTGGCCTCTCGTCGGAAACCTCCTCCACCGCCGCTCTTCTCAATTTCCAGTCCACCAACATCGGAAACTCTCTGCTGCAAGCGAAACCCGAAATAAGAGACACTCCCTCTTCGTTAGACCTCTCAGATGCGGCGGAGGAAATCAGTATAGGACGGAAGAGAAGACCGTCGACGGAGCAGGAGTTGTCGTCGTCTTCGTCGCAACATCAAATGGGGAGTTATCTGTTGCAATCGAGTACAGGGACGATTCCAGCGAGTCACGGAGGAGCTCAGGTTCCGGCAAATTTTTGGATGCTTACGAATACAAATAACCAAGTGATGGGGGGTGATCCGATATGGACGTTTCCGTCGGTTAATAACAGCGGCTTGTACAGAGGAACGATGTCGAGTGGGTTACATTTCATGAACTTTCCGGCACCGGTGGCGTTGGTGCCAGGTCAACAATTCGGGTCCGGCACCGGCGGAGGGAGTAATAACAACAACAACAACAACAATAATAATAGTTCGAGTGAAGGACACTTAAATATACTCGCCGGACTAAATCCATATCGGTCAGTTTCTAGTAGCGGCGTAATGGAACCACAAGGAAGTGGGTCGCAGTCACATCACGGCGGCGGTGGTGGTGGAGATGATCGGCATGATACAACGAGTCACCAGTCGTAA 1254 49.92 MEGGDELHHHHHHHHQNHHHQHQHQHQHRPTFPFQLLEKKDDDAASCSTSPYPSLAISADTTTTTTTTTTTTSSVVAAETSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSSYYNPNFSLHQQRRTLFPGFGLSSETSSTAALLNFQSTNIGNSLLQAKPEIRDTPSSLDLSDAAEEISIGRKRRPSTEQELSSSSSQHQMGSYLLQSSTGTIPASHGGAQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGTGGGSNNNNNNNNNNSSSEGHLNILAGLNPYRSVSSSGVMEPQGSGSQSHHGGGGGGDDRHDTTSHQS* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1459334 1463148 - CsaV3_1G002280.1 Csa01g00228 514725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00228 417 MobiDBLite consensus disorder prediction 1 30 - -
Csa01g00228 417 ProSiteProfiles TCP domain profile. 91 145 IPR017887 -
Csa01g00228 417 MobiDBLite consensus disorder prediction 403 417 - -
Csa01g00228 417 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 416 IPR005333 GO:0003700
Csa01g00228 417 MobiDBLite consensus disorder prediction 10 27 - -
Csa01g00228 417 MobiDBLite consensus disorder prediction 44 98 - -
Csa01g00228 417 MobiDBLite consensus disorder prediction 347 399 - -
Csa01g00228 417 MobiDBLite consensus disorder prediction 47 79 - -
Csa01g00228 417 Pfam TCP family transcription factor 89 260 IPR017887 -
Csa01g00228 417 MobiDBLite consensus disorder prediction 229 268 - -
Csa01g00228 417 MobiDBLite consensus disorder prediction 345 417 - -
Csa01g00228 417 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 20 416 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00533 Csa01g00228 CCT
Csa01g00228 Csa01g00533 ECH
Csa01g00533 Csa01g00228 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00228 Csa-Chr1:1459334 Csa05g02171 Csa-Chr5:24700297 7.56E-47 dispersed
Csa01g00228 Csa-Chr1:1459334 Csa01g00533 Csa-Chr1:3515792 2.01E-08 wgd
Csa01g00228 Csa-Chr1:1459334 Csa05g02440 Csa-Chr5:26363833 7.59E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30618 PF03634 TCP 1.40E-38 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00228 - - csv:101221049 665.996