Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00234 ATGTGTGTCATCTTCCGCTCTCCTTCTATCCTCTCTTTGAAATACCACCATCATTCTATTTCTTTTTCTCACTTCGAAAGAGAGCCTCTGATTTCTCTCATAAAATCATGCACCCACAAATCCCAATTGCTCCAAATCCATGCCCACATCATCACAACTTCTTCCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACGCGTACCGCCTCCGCCCCTTTTCGCGATTTGGGCTATTCTCGACGACTCTTTGATCTTCTGACTAACCCATTTGTTTCTCATTATAATGCGATGTTAAGAGCTTACTCTTTGAGCCGTTCACCACTAGAAGGATTGTACATGTACAGAGACATGGAGAGGCAAGGAGTTCGTGCTGATCCTTTGTCTTCTTCTTTTGCTGTTAAGTCGTGTATAAAATTGCTCTCGTTACTTTTCGGGATTCAGATTCACGCGAGGATTTTTATAAATGGGCATCAAGCGGATAGTCTATTGCTCACTTCCATGATGGACCTGTATTCTCATTGTGGCAAACCTGAGGAAGCGTGCAAATTGTTCGATGAAGTTCCTCAAAAAGATGTTGTTGCTTGGAACGTTTTGATTTCTTGTTTAACTCGCAATAAACGAACTAGGGATGCTTTGGGTCTGTTTGAGATCATGCAGAGTCCAACGTATCTCTGCCAACCTGATAAAGTTACTTGTTTACTCCTCCTCCAAGCCTGTGCAGACTTGAATGCATTGGAGTTCGGTGAAAGGATTCATGGTTATATTCAACAACACGGTTATAATACTGAGAGTAATTTGTGTAATTCGCTGATATCAATGTATTCGCGGTGTGGGCGTATGGATAAGGCTTATGAGGTGTTTGATAAAATGACAGAGAAGAATGTTGTTTCATGGAGTGCGATGATTTCCGGGTTATCGATGAATGGGCACGGGAGGGAAGCTATTGAAGCATTTTGGGAGATGCAAAAGAATGGTGTCGAACCTGGTGATCATACTTTCACTGCTGTTCTTTCTGCTTGTAGCCACTGTGGCCTGGTTGATGAAGGAATGGCATTTTTTGATCGTATGAGACAGGAGTTCATGATAGCTCCCAACGTCCATCACTATGGATGTATAGTTGATCTTTTGGGTCGTGCTGGAATGCTCGATCAAGCCTACGAGCTCATAATGTCAATGGAGGTAAGACCAGATGCGACAATGTGGAGAACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGGAAACCTTGGGGAGCGCATAGTTGAACATTTGATTGAACTCAAATCTCAAGAAGCAGGAGATTATGTGTTGTTGCTGAACATTTATTCTTCGGCTGGCAACTGGGACAAGGTAACTGAATTGAGGAAACTTATGAAGGAGAAGGGTATTTATACCACACCTTGCTGCACCACAATAGAACTGAACGGGGTGGTGCATCAATTTGCTGTGGATGATATTTCACATCCTATGAAAGACAAGATCTACAAGCAGTTGGATGAGATCAACAAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATGTCATCTGAATTACATAGATTAGAGCCAAAAGATAAAGGGTATGCACTTTCTAACCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACTCCGCCAGGAAGAACCATCAGAATCGCAAATAATATTCGTACTTGCATGGATTGTCATAACTTTGCTAAGTACATATCAAGTGTTTATAACAGAAAAGTGGTTGTTAGAGACCGAAGTCGGTTCCATCATTTCCAAGAGGGTCGGTGTTCCTGCAACGATTTTTGGTAA 1809 42.45 MCVIFRSPSILSLKYHHHSISFSHFEREPLISLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1500865 1503209 + CsaV3_1G002340.1 Csa01g00234 514731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00234 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Csa01g00234 602 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 23 594 - -
Csa01g00234 602 Pfam PPR repeat family 294 342 IPR002885 -
Csa01g00234 602 Pfam PPR repeat family 191 241 IPR002885 -
Csa01g00234 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Csa01g00234 602 Pfam E motif 416 474 IPR046848 -
Csa01g00234 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 294 IPR002885 -
Csa01g00234 602 Pfam DYW family of nucleic acid deaminases 510 602 IPR032867 GO:0008270
Csa01g00234 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 360 IPR002885 -
Csa01g00234 602 TIGRFAM PPR: pentatricopeptide repeat domain 332 360 IPR002885 -
Csa01g00234 602 TIGRFAM PPR: pentatricopeptide repeat domain 436 465 IPR002885 -
Csa01g00234 602 TIGRFAM PPR: pentatricopeptide repeat domain 194 221 IPR002885 -
Csa01g00234 602 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Csa01g00234 602 TIGRFAM PPR: pentatricopeptide repeat domain 267 296 IPR002885 -
Csa01g00234 602 TIGRFAM PPR: pentatricopeptide repeat domain 166 193 IPR002885 -
Csa01g00234 602 TIGRFAM PPR: pentatricopeptide repeat domain 95 126 IPR002885 -
Csa01g00234 602 Gene3D Tetratricopeptide repeat domain 92 245 IPR011990 GO:0005515
Csa01g00234 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Csa01g00234 602 Pfam PPR repeat 94 123 IPR002885 -
Csa01g00234 602 Pfam PPR repeat 369 394 IPR002885 -
Csa01g00234 602 PANTHER OS08G0434000 PROTEIN 23 594 - -
Csa01g00234 602 Gene3D Tetratricopeptide repeat domain 246 346 IPR011990 GO:0005515
Csa01g00234 602 Pfam PPR repeat 269 292 IPR002885 -
Csa01g00234 602 Gene3D Tetratricopeptide repeat domain 348 536 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00234 - - - csv:105436340 1231.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00234 Csa-Chr1:1500865 Csa01g02506 Csa-Chr1:22123507 4.59E-23 dispersed
Csa01g00234 Csa-Chr1:1500865 Csa01g00108 Csa-Chr1:617649 5.92E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006872 1 7 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 2 1 1 0 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00234 Csa_Chr01 FPKM 46.57674 51.218586 27.088179 27.519524 23.541292 24.165087 27.400976 2.349609 1.962541 2.763742