Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00238 ATGAATTACTCTGCATCATCACTCTGTTTTTTAGCATTCACTCTGTTCCTCATTCCTCTCTGCCACTGCAAGACGGTGCAGTTCATTTTCGGCGACTCGCTCTCCGACGTCGGGAACAATATTTACCTTTCGAGAAGCCTTGCTCAGGCCAACTTGCCTTGGTATGGCATTGATTTTGGCAATGGACTCCCTAATGGAAGGTTCAGCAATGGCCGCACCGTTGCTGATATCATTGGTGATGAAATGGGTCTTCCAAGACCACCGGCTTTTCTCGATCCATCCTTAACTGAAGATGTAATTCTTGAAAATGGAGTGAATTATGCTTCTGGAGGTGGAGGAATCTTGAACCAAACTGGAGGATACTTTATTCAACGATTCGGTCTCTACAAACAAATTCAGTTATTTCAAGGAACCCAAGAATTGATCAAAGCCAAAATTGGAAAAGAAAAGGCAAAAGAGTTCTTCGAAGAGGCTCGATATGTTGTAGCTTTGGGAAGCAACGATTTCATAAACAACTATCTCATGCCCGTTTACGCTGACTCTTGGAAGTACAATGATCAAACTTTTGTCACTTATTTGATGGAAACGCTTCGTGATCAACTCAAGTTATTGTATGGGATGGGAGCTAGGCAGTTGATGGTGTTTGGGTTAGGCCCAATGGGTTGCATTCCATTACAAAGGGTGCTGAGTACGTCGGGAGATTGTCAAGAACGAACCAACAATTTGGCACTTAGCTTCAACAAAGCGGGTAGTAAACTTCTCGATGGTTTGGCCACTAGACTTCCAAATGCTACCTACAAATTTGGAGATGCTTATGATGTTGTTGCTGATGTTATTAGCAACCCAACAAAATATGGGTTTAATAACTCAGACTCACCATGTTGCTCGTTCGGGAGGATCCGACCCGCCCTAACCTGCATTCCAGCATCAGTGTTGTGCAAAGACAGAAGCAAGTATGTGTTTTGGGATGAATACCATCCATCAGACAAGGCTAATGAGTTGATTGCCAATGAACTGATTAAGAAATTTGGGTTTTTGAGAGTTAATCAAACCGGAGCTCCATCGCCCGCCCCTGAATCCGATCCCAATCCGACCCCAGCTCCTGCAGCAGATCCATCTCCTTCTCCATTGATTTCTCCATCCCCAAACTAA 1152 44.01 MNYSASSLCFLAFTLFLIPLCHCKTVQFIFGDSLSDVGNNIYLSRSLAQANLPWYGIDFGNGLPNGRFSNGRTVADIIGDEMGLPRPPAFLDPSLTEDVILENGVNYASGGGGILNQTGGYFIQRFGLYKQIQLFQGTQELIKAKIGKEKAKEFFEEARYVVALGSNDFINNYLMPVYADSWKYNDQTFVTYLMETLRDQLKLLYGMGARQLMVFGLGPMGCIPLQRVLSTSGDCQERTNNLALSFNKAGSKLLDGLATRLPNATYKFGDAYDVVADVISNPTKYGFNNSDSPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDKANELIANELIKKFGFLRVNQTGAPSPAPESDPNPTPAPAADPSPSPLISPSPN* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1510045 1512624 + CsaV3_1G002380.1 Csa01g00238 514735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00238 383 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 19 357 - -
Csa01g00238 383 Gene3D SGNH hydrolase 23 343 IPR036514 -
Csa01g00238 383 SUPERFAMILY SGNH hydrolase 159 342 - -
Csa01g00238 383 Pfam GDSL-like Lipase/Acylhydrolase 28 338 IPR001087 GO:0016788
Csa01g00238 383 MobiDBLite consensus disorder prediction 357 383 - -
Csa01g00238 383 MobiDBLite consensus disorder prediction 350 383 - -
Csa01g00238 383 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 19 357 - -
Csa01g00238 383 CDD SGNH_plant_lipase_like 28 342 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00238 - - - csv:101221984 722.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00238 Csa-Chr1:1510045 Csa03g02099 Csa-Chr3:17431885 4.25E-103 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g560 . . . Bda15g00606 Bpe12g00544 . . . . . Cma10g00195 . Car10g00185 . Sed08g0218 . . Bhi02g00312 Tan09g2118 Cmetu06g2001 . Hepe09g0115 . . Cla06g01589 Cam06g1758 Cec06g1814 Cco06g1817 Clacu06g1724 Cmu06g1667 Cre06g2481 . . Cone13ag0068 Cone19ag0069 . . . . Blo13g00006 . . . . . . Bma08g00223 . Cmo10g00210 . . . . . . Cpe18g00790 . . . . . . . . . . . . . . Lsi06g01461 Csa01g00238 Chy02g02494 Cme02g01880
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010973 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00238 Csa_Chr01 FPKM 9.832722 11.021908 43.107391 47.139336 49.196415 46.498901 50.194939 38.656254 41.548607 43.884663