Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00239 ATGCTGGAAGTTAAAGATCCTCCCATTAAAATCTTCGGTAAGGAGATTCAACTTCCTCCAGACTGTGAAGTTTCCTTGATCGAAACCGATGATGATGATTCCGATTCTTTTTCCGATAAACAACCCGGAGATGGAGCACTACTTAAGGATGTAGGAAAAGTCTCTGAGAGTTCGGCTGGAAAAGAGGAAACTCTTCATGATTCAGAGGATTCTGCATGTGTACAAACAGCCAATGAGGCGCACATGAATCCTGAAGTTGTATCGATGGATGAAAATGACAAGCTAGAAACAAGCAAACCCGAGAAAGAACAGAATGGTGCACCTAACTCGAAAGAGAAATTGAAAAAGCCAGACAAAATACTTCCATGTCCCCGTTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAACGTCAACCAACCACGCCATTTTTGCAAAGCTTGTCAAAGATATTGGACTGAAGGCGGTACCATGAGGAATGTCCCCGTTGGAGCTGGTCGCCGAAAGAACAAGAACTCGGCCTCTCACTACCGACAGATTACAATCTCAGAGGCTTTACAAGCCGCACAAATTGATGTTCCTAATGGAATCAACTGCCTAGCAACCAAAAGCAACGGCCGAGTCCTAAATTTCAGTGTAAACGCACCTGTTTGTGAATCTATGTCGACTGTCCTCAATCCTGCAGGAAGGAAGGTGTTGAATGGGACTAGGAATGAATTTTACAGACCCGATGACCAAGGAATTAAAGCACCTTGCAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACGATGTCAAGTTCAATGGAGGAAGGAGCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATCAATGGTTTCCCTCCTCAAATTCCGTATCTTCCTGGTGTTCCTTGGCCTTGTTCGTGGAATGCTCCAATGCCACCACCGGCCTTCTGCCCTCCTGGAGTTCCTTTACCATTCTATCCGGCGACATACTGGAGCTGTGGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCCCTCCACAACCATGTTCACAAAACTCTGGTGCAAATTCACCTACACTAGGAAAGCATTCCAGAGATGTTGGTGACAAACTCCAAGCTGATAATTCTGAGAAGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGATTCCCAAAACTTTGAGAATTGATGACCCGAATGAAGCCGCTAAGAGTTCGATATGGGAAACACTTGGAATTAAAAATGATTCAATCAAAGCTGTTGACCTGTCCAAGGTCTTTCAATCAAAGGGTGAACAAAAGAATAGTGTTTCTGAAATGTTATCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTATCAAGATCTATTACTTTCCATGAGCGTTCGTGA 1404 44.09 MLEVKDPPIKIFGKEIQLPPDCEVSLIETDDDDSDSFSDKQPGDGALLKDVGKVSESSAGKEETLHDSEDSACVQTANEAHMNPEVVSMDENDKLETSKPEKEQNGAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRQITISEALQAAQIDVPNGINCLATKSNGRVLNFSVNAPVCESMSTVLNPAGRKVLNGTRNEFYRPDDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIPYLPGVPWPCSWNAPMPPPAFCPPGVPLPFYPATYWSCGVPGAWNIPWFPPQPCSQNSGANSPTLGKHSRDVGDKLQADNSEKEEPPKQKNGSVLIPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGEQKNSVSEMLSPVLQANPAALSRSITFHERS* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1515388 1518837 + CsaV3_1G002390.1 Csa01g00239 514736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00239 467 MobiDBLite consensus disorder prediction 86 118 - -
Csa01g00239 467 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Csa01g00239 467 PANTHER CYCLIC DOF FACTOR 2 1 466 IPR045174 GO:0003700|GO:0006355
Csa01g00239 467 MobiDBLite consensus disorder prediction 26 118 - -
Csa01g00239 467 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Csa01g00239 467 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Csa01g00239 467 MobiDBLite consensus disorder prediction 55 69 - -
Csa01g00239 467 MobiDBLite consensus disorder prediction 354 398 - -
Csa01g00239 467 MobiDBLite consensus disorder prediction 247 270 - -
Csa01g00239 467 MobiDBLite consensus disorder prediction 367 388 - -
Csa01g00239 467 PANTHER CYCLIC DOF FACTOR 1 1 466 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00239 - - - csv:101222224 950.273
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00554 Csa01g00239 CCT
Csa01g00239 Csa01g00554 ECH
Csa01g00554 Csa01g00239 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00239 Csa-Chr1:1515388 Csa03g03825 Csa-Chr3:33707030 1.01E-144 dispersed
Csa01g00239 Csa-Chr1:1515388 Csa01g00554 Csa-Chr1:3605166 7.64E-145 wgd
Csa01g00239 Csa-Chr1:1515388 Csa05g02462 Csa-Chr5:26447482 1.41E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30621 PF02701 zf-Dof 2.50E-32 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00239 Csa_Chr01 FPKM 20.096935 23.931314 68.803383 69.58049 120.710205 100.040436 119.80217 50.747482 52.042477 52.083397