Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00242 ATGGCGTTTCTTGGACTTCTCTTGGTGGGTCTTCTTCTATCTTTGGGATGTGATTCTGCTCTTGCCAACAACAATGGAGGTGGTTGGATTAGTGCCCACGCCACATTCTACGGTGGGGGTGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGCACAGCTTTATTCAACAATGGACTAAGTTGTGGCGCTTGCTTTGAAATCAAATGTGTAAATGACCCAAAATGGTGTCTTCAAAAGTCCATTGTGGTTACTGCCACAAACTTTTGTCCACCAAACAATGCGCTCCCAAACAACGCCGGCGGCTGGTGTAACCCTCCCCAACACCATTTCGATCTCTCCCAACCCGTCTTCGAACAAATCGCTGGTTACAAAGCCGGCATTGTCCCAGTGGCATACAGAAGGGTATCTTGTGAGAAGAAAGGAGGCATTAGATTCACAATCAATGGTCATTCGTACTTCAATTTAGTCCTTGTAACCAACGTTGGTGGAGGTGGGGATGTTCATGGAGTGTGGATTAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAATTGGGGACAGAATTGGCAGAGCAATTCATATCTGAATGGACAAAGCTTATCGTTCAAAGTGACCACCGGCGATGGCAGAACAGTGATATCCAACGACGTAGCGCCAGCTCAGTGGAGCTTTGGTCAAACTTTTAGTGGGTTGCAGTTCCGATGA 759 48.35 MAFLGLLLVGLLLSLGCDSALANNNGGGWISAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPKWCLQKSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFEQIAGYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVISNDVAPAQWSFGQTFSGLQFR* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1529037 1529941 - CsaV3_1G002420.1 Csa01g00242 514739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00242 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Csa01g00242 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Csa01g00242 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Csa01g00242 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Csa01g00242 252 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Csa01g00242 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Csa01g00242 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Csa01g00242 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Csa01g00242 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Csa01g00242 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Csa01g00242 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Csa01g00242 252 Gene3D - 156 251 IPR036749 -
Csa01g00242 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Csa01g00242 252 SMART dpbb_1 64 149 IPR007112 -
Csa01g00242 252 PANTHER EXPANSIN-A15 8 251 IPR002963 GO:0009664
Csa01g00242 252 Gene3D - 15 155 IPR036908 -
Csa01g00242 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Csa01g00242 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Csa01g00242 252 PANTHER EXPANSIN 8 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00242 Csa-Chr1:1529037 Csa02g00844 Csa-Chr2:7719916 2.82E-135 dispersed
Csa01g00242 Csa-Chr1:1529037 Csa01g00561 Csa-Chr1:3628264 1.25E-97 wgd
Csa01g00242 Csa-Chr1:1529037 Csa05g02468 Csa-Chr5:26468526 1.40E-145 wgd
Csa01g00242 Csa-Chr1:1529037 Csa05g02995 Csa-Chr5:30259871 1.45E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00242 - - csv:101222936 496.508