Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00250 ATGAATAATAAGCCTCCCTCGGAACCGGCGATGCCGACGTCCTCAATGGCCTCAACTATCAAAGCTTACTCCGTGCCTCTAATTCTCTTTTCTTTAGCTGTTTTTTATCACCTTGTTGTTATTCCTGCCTCCTTCCCTACTTCTCACTACGACGTTTTGGGAATTAAGAGGTACAGTTCCGTTGATGAAGTGAAAGAAGCATATGAAAAGCTCTCGAACAAATGGGAGTCAGGAGGGGAAATTTCGGAGGCCGTTGATTTTGTAAAGATTCAATATGCTTATGAGTTGCTAAAGAATAATTTATGGAAACGCGACTATGATCTTTTTGGCTTTGACGAACAACGAGGTGTTCTTGAAAAGGCTAAAGTGCAATATGCTGGAAAAAAAATTTCGGAAATAAGTCTCCCATTGTTAGATGAAGTTGCATTAAATACTGAAGATCGCAGCCTTAACTTTATAAGGTCTAATGATGTTCAATCTATGTTTAATGATGATAAGCCATCACTAATTATGTTGTATTCATTTGGAAGCAAACTCTGCGTTCGATTTTCTGATGTATGGAAACAAATTGTTGCTTTGCTGGATGGAGTTGCTAATACTGCAGTAGTGGAACTTGGTGAAGCTCAACTTGCTGCTTACCTTGCAGAGAAAAAGCCTACTGGACAACCATTCTTCAGGAATGGACTACCATCATTTGTTGCCTTTTCTCCCGGCTGTAAATCAACTGATTGCATTAATAGGTTCAATGGAAAGCTTTCTTTTGATGATATTACAGATTGGTTTGCAACAAGCATACTGTATCTACCTCGAATCCTTTACTACTCAAAGGAGACATTGGGACCTAAATTTTTGGCAAAGAGTAGTCCCCATAAGGTCAAAGTTATTATTTTCTCAGAAACTGGAGAACGTGCTGCACCATTCATTCGCCAAACTGCAAAGAACAACTGGGATTCAGTTTCATTTGCCCTTGTGCTATGGCGAGAAGAGGAATCATCCATCTGGTTGGACGCGTTTGGGGTAGAACTTGCACCTGCTATGGTATTCTTGAAAGATCCAGGAATGAAGCCTATTGTGTACCACGGCTCTGTCAATAGGTCCTCGTTTGTACAGCTCATTGAACAGAATAAGCAACATGAGCTTCCTCAACTAAGAAGTCGGACATCAATGGAGCTGGGATGTGATCCTCATGGTTATTCTCGTGCTGGATCTGACACATTAACGTGGTACTGTGCGATTGTAGCTGGAAGGCTGGGTGCAGAACTCAACAAAATGCGTGAAACAATGCGCAGGGTCAAAGAAACTTTAACTAGTGATAGTGAAGCTTATGGAGCCGATGAAGACCCAAAGATATTTCCGGCTGTAGTCGCACTTCAAAGCCAACGTTTGTCCTTCACTTGGCTTGACGGTGAAGCCCAGAAGAAATATTGTTTCTTTTACATCAGCTCTGAATCTAGCTATGAAACTTGTGGACCAATGAGAGATCTCAGTGACGTGCCTCGATTATTTATTGTGCGGTACAAAAGGGATGCTACTAAAGCTAAGGAGATGAAGCCAAAAAGTATGTTTGATACATCATCTGATGATCCGGATCTTGCCGCACAGCTTGTGGCTCTTTACAATGGTTCATCTGAAATTTCAGAGATTGCTCAATGGGTCTCAAAAATAATCGAGGATGGTGATTCGAAGGATCTGCCCTTTTATAGAGTGAAGTCTCCTGAACTTGTTCATGAAGATCCGGAGCCTATGAGTTTTGGAAGCGCTGGGAGTAGTTTTATTACCAATGTGTTGAAGAGGATTGAGCACATCAAAGTTGGAATCTATGACCGTCTAGAGGACCCAAGGATTGGTCCAGTCTTATTTCTTGCATCATTATTGTCTTTCGGTACAATATGGCTACGGAAGTCTCAACCCACTCCCCCATCTCGACCAGCTGCGCAACCAGAACCCCCAAGTGAATCCGCTCAACCAAGTCAACCGATTACTAAGGAAGGAAGCAAACCCAGAAGAAGAAACCGGTCGAGAACCGCATCAAATGCTGACGTACCTCCTTCCATCACTGACTTAGAGCCTCCAAATGCTTATCAGATGCATCTTTCGGGTTCTGATTCTGAATAG 2115 42.36 MNNKPPSEPAMPTSSMASTIKAYSVPLILFSLAVFYHLVVIPASFPTSHYDVLGIKRYSSVDEVKEAYEKLSNKWESGGEISEAVDFVKIQYAYELLKNNLWKRDYDLFGFDEQRGVLEKAKVQYAGKKISEISLPLLDEVALNTEDRSLNFIRSNDVQSMFNDDKPSLIMLYSFGSKLCVRFSDVWKQIVALLDGVANTAVVELGEAQLAAYLAEKKPTGQPFFRNGLPSFVAFSPGCKSTDCINRFNGKLSFDDITDWFATSILYLPRILYYSKETLGPKFLAKSSPHKVKVIIFSETGERAAPFIRQTAKNNWDSVSFALVLWREEESSIWLDAFGVELAPAMVFLKDPGMKPIVYHGSVNRSSFVQLIEQNKQHELPQLRSRTSMELGCDPHGYSRAGSDTLTWYCAIVAGRLGAELNKMRETMRRVKETLTSDSEAYGADEDPKIFPAVVALQSQRLSFTWLDGEAQKKYCFFYISSESSYETCGPMRDLSDVPRLFIVRYKRDATKAKEMKPKSMFDTSSDDPDLAAQLVALYNGSSEISEIAQWVSKIIEDGDSKDLPFYRVKSPELVHEDPEPMSFGSAGSSFITNVLKRIEHIKVGIYDRLEDPRIGPVLFLASLLSFGTIWLRKSQPTPPSRPAAQPEPPSESAQPSQPITKEGSKPRRRNRSRTASNADVPPSITDLEPPNAYQMHLSGSDSE* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1562532 1573789 + CsaV3_1G002500.1 Csa01g00250 514747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00250 704 MobiDBLite consensus disorder prediction 635 704 - -
Csa01g00250 704 MobiDBLite consensus disorder prediction 640 654 - -
Csa01g00250 704 SUPERFAMILY Thioredoxin-like 154 262 IPR036249 -
Csa01g00250 704 SUPERFAMILY Chaperone J-domain 35 110 IPR036869 -
Csa01g00250 704 Pfam DnaJ domain 49 107 IPR001623 -
Csa01g00250 704 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 16 29 703 - -
Csa01g00250 704 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 16 29 703 - -
Csa01g00250 704 SMART dnaj_3 47 102 IPR001623 -
Csa01g00250 704 Gene3D DnaJ domain 46 128 IPR036869 -
Csa01g00250 704 CDD DnaJ 49 99 IPR001623 -
Csa01g00250 704 ProSiteProfiles dnaJ domain profile. 48 110 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00250 - - - csv:101203381 1368.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g573 . . . Bda15g00611 . . . . . . . Cma11g00134 . Car11g00162 Sed12g1961 . Cpe04g01489 Bhi02g00302 Tan09g2101 Cmetu10g1617 . Hepe09g0105 . . Cla06g01579 Cam06g1747 Cec06g1805 Cco06g1807 Clacu06g1713 Cmu06g1657 Cre06g2470 . . . Cone19ag0064 . . . . . . . . . . . . . . Cmo11g00178 . . . . . . . . . . . . . . . . . . . . Lsi06g01453 Csa01g00250 Chy02g02484 Cme02g01870
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011601 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00250 Csa_Chr01 FPKM 227.768051 237.956406 205.589859 188.678391 238.450272 321.442657 226.769165 249.951645 261.439911 230.64592