Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00252 ATGGGTCCGACGGAGGATCGTTCCGAGATTGCCTTCTTTGACGTCGAGACCACCGTTCCCACCCGCCAAGGTCAGAAATTTTCTATTTTGGAATTTGGAGCCATTCTGGTTTGCCCTAAGAAGTTGGTTGAGTTGGAAAGTTATTCCACTCTCGTAAAACCCTCTGATCTCTCCCTCATTTCCTCCTTATCGGTGCGATGCAATGGCATTACTAGAGATGCTGTCATTTCTTCCCCTACTTTCGCCCAAATTGCTGATAGGGTTTACGATATACTTCACGGGCGGATATGGGCGGGTCATAACATACTTAGATTTGATTGTGCACGAATCAGGGAGGCTTTTGCAGAAATTGGTGTGCCAGCACCTGAGCCAAAAGGTACAATTGATTCATTGGCATTGTTGACTCAAAGGTTTGGAAGGAGAGCTGGGGACATGAAGATGGCCACCCTTGCTTCCTATTTCGGGATAGGACAACAAACACACAGGAGTTTGGATGATGTTAGAATGAATCTCGAAGTTCTAAAATATTGTGCAACCGTCTTGTTTCTGGAATCAAGTCTACCCGAAGTTTTCCCAGAGAACAGTTGGGTTTCTCCAAATGCTGTTACTAGGCGTCGTGCTGCAAAGTCGTCTCCACAGGGGAATAGTTCAAACAATAATTCTCACGCATCAAGTTCAAATATTGGTGGTAATCCCATATCTCTACCAGTTCAACAAGGGGAAACTCATCCGATACTTTCTCTTGTAACTATCTGTTCTGAGGACAGAGCCTCAATTCTGGCTGAACCTAGTGCAACTGAATCAGATTCTTTTAATATGCACACTACCAGCGACCAAATAACAGGTGCAACACTCGAAACAGATATCAACATGGAAGAACATGCCACAGTATCTACCGAAGCATCTCCCTCAGAGGATACTTCCACAAGTCTTTGCACTACTAAATTTTTGGAGCCAGATCAGGTGTCTGTTTCGTTCATCACTGCATCTTTCGTTCCATTTTTTCGTGGGAGCCAAAGAATACAGTTATGGCACAAAGATGACTGTTTACAGCTTCTATGTAATAATCTGAGAGTTCGGTTTGGCATAAGCACGAAATTCACTGACTACGCTGGCCGTCCGAGGTTGAGTTTTGTTGTTGATGTACCACCAAATTTATGCACGGTTCTTGAAGCATCTGATGGAGTGGCTCAGAGATTATTTTCTGATTCTGGCAGCGGTTCTGAATGGAGGCCTGCAGTGACGAGAAAGAATGGTTATTTCAACTACCCGACAATGAGATTACACATTCCAACTGCAGTAAGTGGAGATGTGGCAAATTATGCTACAGAAATGCACCAAAAAGAAGCATCAGGCGCTGTTCAAAGGTTAATATTCAGTAAATTTGATGCTGCAGAGCTTGATAGCTTGATCAAACCTGGAGCCATTTTAGATGCATTCATTTCCTTGGATACATATGACTATCAACAGAGTGCAGGCATTAGATTGGTAGCAAAAAAGTTGATTATCCGTTCCTAG 1518 43.41 MGPTEDRSEIAFFDVETTVPTRQGQKFSILEFGAILVCPKKLVELESYSTLVKPSDLSLISSLSVRCNGITRDAVISSPTFAQIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGVPAPEPKGTIDSLALLTQRFGRRAGDMKMATLASYFGIGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPEVFPENSWVSPNAVTRRRAAKSSPQGNSSNNNSHASSSNIGGNPISLPVQQGETHPILSLVTICSEDRASILAEPSATESDSFNMHTTSDQITGATLETDINMEEHATVSTEASPSEDTSTSLCTTKFLEPDQVSVSFITASFVPFFRGSQRIQLWHKDDCLQLLCNNLRVRFGISTKFTDYAGRPRLSFVVDVPPNLCTVLEASDGVAQRLFSDSGSGSEWRPAVTRKNGYFNYPTMRLHIPTAVSGDVANYATEMHQKEASGAVQRLIFSKFDAAELDSLIKPGAILDAFISLDTYDYQQSAGIRLVAKKLIIRS* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1577147 1580134 + CsaV3_1G002520.1 Csa01g00252 514749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00252 505 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 5 504 - -
Csa01g00252 505 MobiDBLite consensus disorder prediction 202 236 - -
Csa01g00252 505 SUPERFAMILY Ribonuclease H-like 9 179 IPR012337 -
Csa01g00252 505 CDD DEDDh 11 175 - -
Csa01g00252 505 PANTHER PROTEIN NEN3 5 504 - -
Csa01g00252 505 Pfam Exonuclease 12 174 IPR013520 -
Csa01g00252 505 Gene3D - 4 181 IPR036397 GO:0003676
Csa01g00252 505 SMART exoiiiendus 9 183 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00252 - - - csv:101203629 982.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00252 Csa-Chr1:1577147 Csa06g03178 Csa-Chr6:27036934 2.60E-94 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g581 . . Bda06g00537 . . . . . . . Cma10g00204 Cma11g00131 Car10g00193 Car11g00165 Sed08g0233 . Cpe04g01486 Bhi02g00300 Tan09g2098 Cmetu02g0126 . Hepe09g0103 . . Cla06g01577 Cam06g1745 Cec06g1803 Cco06g1805 Clacu06g1711 Cmu06g1655 Cre06g2468 . . . . . . . . . Blo15g00320 . . . . . . . Cmo10g00221 Cmo11g00181 . . . . . Cpe18g00783 . . . . . . . . . . . . . . Lsi06g01450 Csa01g00252 Chy02g02482 Cme02g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005500 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00252 Csa_Chr01 FPKM 11.479127 14.085872 13.693094 13.062411 14.134819 12.424341 13.133962 14.894113 13.001939 13.136105