Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00256 ATGGCCATGTCTGAACCTTCACCCAGTTTGTCCATGGATTCTCTCGGCGACATCGATGACTACATTTGGGCCAATGAAGGAGAGGGTTCATTGCCATGGGACATGTTCAGAGATGTTTTTGAATTTGTACAAAATGGGAATCAAGCATTTAAAAATAATCACTTTGAAGAGGCAATCAAGTATTACTCAAGAGCTAATAACATCAAGCCCGGTGATCCAGTTATTCTCAACAATAGAAGTGCTGCTTATATCAGGATAAGTCAGTTCCTGAAAGACAGACCACCAGCTGCTTCTGAATATCGACCATTAAATGGGTTGGATCCTACAGTACATGCTGAGCTTGCACTAAAAGATGCTGAGAAGCTGATGGACCTACGCGGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATGCTCCTAGAAAAATATGCCATAGCAAAGGATATTATTCTTTCTGGTCTTCAAATTGACCCTCTAAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGAATAGCTGCAACTATGATGGGAAATGGACGCCATGGGCTACCAGATCGTAGCGATGACTTTGATTGCACCCTTTGTCTTAAGCTTCTTTATGAACCCATCACAACTCCTTGTGGGCATTCTTTCTGCCGTTCTTGCTTATTTCAGTCTATGGATCGTGGTAATAAATGTCCGTTGTGCAGAACAGTTCTTTTTATCAGTTCAAGAACATGTTCAATCAGTGTTACACTGAGCAACATTATACAGAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGTCAGAAAATGAGGGTTTAACAAATTTTGGTGTCGATTTAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTTCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTCAGGAGGGTAATGGAAGGCAATCATCGTATGGGAATGGTTATAGTGGATTCTACAACTGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATTACGGAGTGTGAGCCACTTGCGGATGGACGTTTTTATCTAGAGATTGAAAGTCGTCGAAGATTTCGCATTATTCGATCTTGGGATCAAGATGGATATCGAGTGGCAGAGATCGAATGGGTGAATGACATAACTCCTCCAGAAGGGACAATAGAGCGGACAGAACTGCAAGAAATGACAACTAACGCAGCAGAGTATGCTCAGTCATGGATAAGGAGGGCAAAAGAAGCATCTAGACGAGATCAAATAAAACGGGATCGACTTCTTAACGTGGAAGCAATGATGCCCTCATCGCGAGATCCTGAGCGGTTTAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCCTTGGAAAGATTGGAACTTCTACGAATGACGGATACAAGAGAGAGGATAAGGCGTGGACTTGTATATCTCAAAGCAGAAGAACAGGGCTGTCAGATGCAATGA 1464 42.42 MAMSEPSPSLSMDSLGDIDDYIWANEGEGSLPWDMFRDVFEFVQNGNQAFKNNHFEEAIKYYSRANNIKPGDPVILNNRSAAYIRISQFLKDRPPAASEYRPLNGLDPTVHAELALKDAEKLMDLRGKSVKPYILKANALMLLEKYAIAKDIILSGLQIDPLSNPLQASLQRLERIAATMMGNGRHGLPDRSDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCSISVTLSNIIQKNFPEEYAERKSENEGLTNFGVDLMPLFVMDVVIPCQKFPLHIFEPRYRLMVRRVMEGNHRMGMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFRIIRSWDQDGYRVAEIEWVNDITPPEGTIERTELQEMTTNAAEYAQSWIRRAKEASRRDQIKRDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMTDTRERIRRGLVYLKAEEQGCQMQ* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1592610 1601117 + CsaV3_1G002560.1 Csa01g00256 514753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00256 487 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 478 IPR003111 -
Csa01g00256 487 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Csa01g00256 487 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Csa01g00256 487 PANTHER RING FINGER PROTEIN 127 5 480 - -
Csa01g00256 487 Gene3D - 413 479 - -
Csa01g00256 487 SUPERFAMILY PUA domain-like 281 477 IPR015947 -
Csa01g00256 487 SMART lon_5 280 479 IPR003111 -
Csa01g00256 487 SUPERFAMILY TPR-like 42 174 IPR011990 GO:0005515
Csa01g00256 487 SMART tpr_5 39 72 IPR019734 GO:0005515
Csa01g00256 487 SMART tpr_5 130 163 IPR019734 GO:0005515
Csa01g00256 487 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 5 480 - -
Csa01g00256 487 Gene3D Tetratricopeptide repeat domain 38 182 IPR011990 GO:0005515
Csa01g00256 487 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Csa01g00256 487 SUPERFAMILY RING/U-box 190 258 - -
Csa01g00256 487 Gene3D - 280 381 IPR046336 -
Csa01g00256 487 ProSiteProfiles Lon N-terminal domain profile. 278 479 IPR003111 -
Csa01g00256 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 276 IPR013083 -
Csa01g00256 487 SMART ring_2 197 234 IPR001841 -
Csa01g00256 487 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00256 - - - csv:101204351 975.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00256 Csa-Chr1:1592610 Csa03g02528 Csa-Chr3:23667869 7.51E-17 dispersed
Csa01g00256 Csa-Chr1:1592610 Csa03g02695 Csa-Chr3:25774663 8.91E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00256 Csa_Chr01 FPKM 101.911598 101.893433 125.714546 127.074844 41.187214 41.755718 41.393986 144.79158 150.13382 158.511795