Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00257 ATGGGAGGAGAATTTTCCAGGGCTCCAACCCCTCGAATCCCCTTCTCCTCCCTTCTCCTTCTTCTTCTTCTCTTCCTCCTCTCTGCCACTCTCTCCGCCGCCAAAAACCCCTTATTCCCTTCCTTCACCCCTCGTGACGTTTATCTCATCGACTGCGGTTCCCCTTCCCAAACCCGTCTCGACGACGGCCGCATTTTCAAATCCGATCGTGAATCCACTTCTCTTCTTTCCACCGAAGAAGACGTTCAAGCCTCCGTCGATTCCATTCCCTCAAACGCTCTCGTTTCTCCTCTCTCTTCTTGGTCATTGCCTCTTTTTCTCACCGCCAGAATTTTCCCTACCGATTCCACCTACACTTTCTTCATTTCTCAACCTGGACGCCATTGGATCCGCCTCTACTTTTACCCTCTCCCTAATGCTAATTTCAATCTCACCGATTCCGTTTTCACCGTCACCACTGACTCCGTCGTTCTCCTCCATGATTTCTCAATCAAACCTAATCCCAAAATCGTTTTCAGAGAATACCTTATCAACATCACCACCGATCGATTCTCCCTTGAATTCAAACCTAAGAAGAATTCCTTTGCCTTCATCAATGCTATTGAAATCGTCTCCGCTCCAGATGCTCTGTTTTCCGATTCCGCTAACTCTGTTTCTCCGGTGGGATTTTTCAACGGATTGTCCAATATTGCTTTGCAAATTTGCCACCGCGTTAATGTGGGTGGCCCTGAAATTGTTCCTAAAAACGACACGTTGTCAAGAACATGGGAAACCGATGCTGCTTACAACAAATTTCCACAGGGTTCGAAGAATGTTTCTGTGGATTTGGACTCGATTAAATACCCTGGAATTGAATTGACTCCATTGATTGCTCCTAATTGGGTTTATGCAACTGCTGAGGACATGCAAGATCCTAAAACAATGCAAGTGAATTTCAATATGAGTTGGAGTTTCAATGTGGAACAGAGTTACTCGTATTTGATTAGACTCCATTTTTGCGATATTGTGAGCAAAGTTTTGAATAATTTGTACTTCAATGTGTACATTAATGGGATGATGGGTATTGCTGATCTTGATCTCTCTCAACTCACCGGTGATCTTTCTACTCCCTACTACAGAGACCTCGTTCTTAATGCCTCCGACATTAAGAACAACACCATCATGATTCAGGTTGGTCCATCAAACGTGGATTCAGGGCTACAAGATGCAATCCTAAATGGAGTGGAAATCATGAAGATGAGTAACGATGCACAAAGCTTGGACGGCTTATTTTCAGTGGATGGAACATACATGGGAGGCTCAACGCTTAGCACAATGAAGATAATAGCAGTTGTGGGACTTGGAATCGGAGCCATTGCCATTGTTTTTCTTGGTGTCATGTTCTTGAGATGGCACAACAGACCAAATGGATGGGAAAAGAGACACAGTTTCTCTTCATGGCTTCTTCCTTTGAATAACAATAATTCAACTAACACAGCCAGTTTCTTCTCCTCTAAAAGCAGTTCTAGAAGATCATCCACCGTCTTTAGCTCTCGCCGAAGCAGAACTGGCTTCTCCGGTATTTACTCCAACGTTGGTCTCGGCCGTTTCTTCTCCCTCAATGAGTTACAGGTTGCTACACAAAATTTCGAAGAGAAAGCAGTGATCGGCGTCGGTGGATTCGGCAAAGTCTACGTCGGAGCATTAGAAGATGGAACAAAAGTCGCCATTAAACGTGGAAACCCAAGTTCCGATCAAGGCATTAACGAGTTCAGAACCGAGATTGAAATGCTCTCTAAACTCCGCCATCGCCATCTGGTTTCTCTCATCGGTTTCTGCGACGAACAGTCCGAGATGATTCTGGTTTACGAATACATGGCCAATGGCCCATTTCGCGACCATTTGTATGGCTCTAATCTCCCTCCTCTGTCCTGGAAACAGAGGCTCGAAATCTGCATCGGTGCTGCTCGTGGCCTTCATTATCTCCACACTGGTGCGGCTCAGGGCATTATCCACCGTGATGTTAAGACCACTAACATTCTTCTTGATGAAAATTTTGTTGCTAAAGTTGCTGATTTTGGGCTTTCAAAAGCTGCACCATCCTTGGAACAGACCCATGTTAGCACTGCGGTTAAAGGAAGTTTTGGTTATCTTGATCCTGAGTACTTTAGACGACAACAACTTACTGATAAATCTGATGTTTACTCATTTGGGGTTGTTCTTTTTGAGGTTCTATGTGCAAGACAAGTCATCAATCCTACGTTGCCTCGTGAGCAGGTAAATTTGGCAGAGTGGGCAATGCAGAATTACAGAAAAGGAAAACTAGAGAAGATAATTGATCCTAAAATTAGCAGCTCAATTGTAGAGGGGTCACTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGGGTTGATAGGCCAAGCATGGGAGATGTTCTATGGAACTTAGAATACGCTTTGCAACTACAAGAGGCAGTATCAGAGCTCGAGGACCCTGATGAAGACAAATGCGAAGGCCTTGTGGCTTTGGACAAACCAAATGACAATCAACCAAAAGCAGGATCTACAAGTGCTTCTGTAAGTGATGATACTTCTGAAGTCTCAGTTAGTGCTCCTTTGTTTTCTGAAGTTCAAAGTTTTCAAGGAAGGTGA 2643 44.31 MGGEFSRAPTPRIPFSSLLLLLLLFLLSATLSAAKNPLFPSFTPRDVYLIDCGSPSQTRLDDGRIFKSDRESTSLLSTEEDVQASVDSIPSNALVSPLSSWSLPLFLTARIFPTDSTYTFFISQPGRHWIRLYFYPLPNANFNLTDSVFTVTTDSVVLLHDFSIKPNPKIVFREYLINITTDRFSLEFKPKKNSFAFINAIEIVSAPDALFSDSANSVSPVGFFNGLSNIALQICHRVNVGGPEIVPKNDTLSRTWETDAAYNKFPQGSKNVSVDLDSIKYPGIELTPLIAPNWVYATAEDMQDPKTMQVNFNMSWSFNVEQSYSYLIRLHFCDIVSKVLNNLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASDIKNNTIMIQVGPSNVDSGLQDAILNGVEIMKMSNDAQSLDGLFSVDGTYMGGSTLSTMKIIAVVGLGIGAIAIVFLGVMFLRWHNRPNGWEKRHSFSSWLLPLNNNNSTNTASFFSSKSSSRRSSTVFSSRRSRTGFSGIYSNVGLGRFFSLNELQVATQNFEEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGFCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARQVINPTLPREQVNLAEWAMQNYRKGKLEKIIDPKISSSIVEGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPDEDKCEGLVALDKPNDNQPKAGSTSASVSDDTSEVSVSAPLFSEVQSFQGR* 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1601882 1606509 + CsaV3_1G002570.1 Csa01g00257 514754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00257 880 Pfam Protein tyrosine and serine/threonine kinase 546 770 IPR001245 GO:0004672|GO:0006468
Csa01g00257 880 CDD STKc_IRAK 549 814 - -
Csa01g00257 880 PANTHER OS07G0166700 PROTEIN 37 854 IPR045272 GO:0004714|GO:0006468
Csa01g00257 880 SMART serkin_6 543 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00257 880 Gene3D Phosphorylase Kinase; domain 1 510 618 - -
Csa01g00257 880 Pfam Malectin-like domain 50 413 IPR024788 -
Csa01g00257 880 PANTHER OS03G0759600 PROTEIN 37 854 - -
Csa01g00257 880 MobiDBLite consensus disorder prediction 830 866 - -
Csa01g00257 880 MobiDBLite consensus disorder prediction 846 866 - -
Csa01g00257 880 SUPERFAMILY Protein kinase-like (PK-like) 517 814 IPR011009 -
Csa01g00257 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Csa01g00257 880 ProSiteProfiles Protein kinase domain profile. 543 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00257 880 ProSitePatterns Protein kinases ATP-binding region signature. 549 571 IPR017441 GO:0005524
Csa01g00257 880 Gene3D - 230 416 - -
Csa01g00257 880 Gene3D - 45 207 - -
Csa01g00257 880 Gene3D Transferase(Phosphotransferase) domain 1 619 835 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00257 Csa-Chr1:1601882 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa01g00257 Csa-Chr1:1601882 Csa06g01709 Csa-Chr6:15028080 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77736 PF12819 Malectin_like 4.10E-37 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00257 - - csv:101204351 1613.59