Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00260 ATGGCGCTGTTCAGACGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAGCTACAGAGTCACTTTCCTGATGCGTCATTCATGGTTTTCAACTTCAGAGAAGGTGGTAGGCGGAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTCGGCAGTATGAGGGGTGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAAGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTCTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTTCTTTAAATCCTCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCCGATTGGCCTCCATCAGATACACCTCTAATTTTGGATTGTTTAATACTAAGAGTTCTACCTCTTTTTGATGGGGGAAAGGGATGTAGGCCTGTTGTGCGTATTTACGGTCAAGACCCCTCAGCACCGGCCAATAGAACTTCAAAGCTTTTATTTTCGACACCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGATGAAGATCTAGTACACGAGGAGATGATGTTTCGAGTCATGTTTCACACAGCATTTGTTAGATCAAACATTATGATCCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGACCAGTATCCCAAGGACTTCAGAGTTGAGGCGCTCTTTTTGGATGCTGATGCTGTTGTCCCCAATCTCACCGCATCCTTCGATGATGAAGATGGAAATGAAACTGGAGCTGCTTCTCCTGAAGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGTAATGGATGGGCAGGAAGCAAAGGGATCCAATGATCCTCACGTAGTCAATCATGTAAATCGTAAAGAAGAATGGAAGGAGGACTTCGACCCTCCTGCATTCCAAGACTGTGCATCTGACGATGGAAATCTTAAGCATTATAAAAAGTCTGATTTTGATGCAGTGAAGGACATCACAGTGGATGATGTGAAGTACAAACTGGATGAAAATATATATTCTGAACTTAATGCAGTTAAGGACATTGCTGTGGATGATGGAGAAATGAATTCGAATTCCTTCTTGGTAGCTACTAATGTCCCGACTCATGTGAAAGTCCAGGGGTTGGTGGATGATGCATATGAAAAATTTGAAGATATGGAAGAAAAGGATGATGGAAGAGATACTTCACCCGAGAAATTGGAAAACAAGGTTCTGCAGAAGAAGTTGAGTGCTGATGGTTCTAGACAAAAATCAGAAAAATTGCAAACACCAATTCCCAAGAAACAGCCTGTTTCAAGTGGAAAACCGACCAATGATATGGGTTTAACCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTCTCTGCAAAACAAGCAAAGCCAAATGCAGTTTCTAGATGGATCCCTCCTAACAAAGGCTCTTATATGAATTCTATGCATGTTTCCTATCCACCCTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCATCGAAGGATGTAAATGCAAATTCCAAAACGAAGGCCACTGCCACCCTTGATTCTCTGGTTTCTTCAGATGTTTTTACTGAACGAAAAAACTATAAAGTGGATACTGTGAGGCCTTCTCACTCCGCACCTGGGAACCTCATGCATGGTCCATCATCTCCAGTTGAGTCAATTGGTGAGACACCTTCTTCCTCTGAAATTTTAAAACCTTCACATAGTGATGTACAACTTGAAAATAGTGTTTTTCCCCATTCTTCAACACAACCATCATGGGAGAAAATATATTCTTCTGTTGATACTGGTAAAGTGACTGGTTCTATACCTCTACCCCTACCTTCCTCTGTGGACATGCTATCTACCTTAAAGAATATTGCCCGTACTTCTCTTCTTGCCTCGTCACATAAAGAGATATCACTATCACCACCACCTCACCCACCTCCCCCACCTTCTATGAAACATGAAGCACTTATTCCACCACCTCCACCACCCCCACCTATTATTTCAGGGCATGGTGCTTCTCCAGCTCCTCCCCCTCCCCCTCCACCCCCACCCCCACCCCCACCCCCACCCCCATTAATGCCCGATGCATTTCCTTCACCATCTCTAATGAAAACAGTACCACCACCCCCACCACCTCCGCCCCCACCCATGTATGGTGCATCTCCAACACTATCTTTAATACATCAAGCGCCATCTTCAATGCATAGAGCCTCACCTCCTCCACCTCCTCCCCCACCACCTTCCATGCGTGGAGTTCCACCTCCACCACCTCCTCCCACCCCACCTTCCATGTATGGAGCCTCACTTCCACCACCTCCTCCCCCTCCACCTTCCATGTATGGAGCTTCACCTCCACCGCCTCCTCCCCCACCACCACCACCTTCCACGTGTGGAGCCTCACCTCCACCACCTCCTCCCCCACCACCTTCCATGTATGGAGCCTTACATCCCCCACCTCCTTCCCCCCCACCTTCTATGTATGGATCACCATCCCCACCCCCACCTCCTCCTCCTTTGCCATCTTCGATGTTTGGTGCAACTTCTCCTTTGACCCCTATAATGCGAGGGATACCCTCTCCACCCCCACCACCTTCGATGTGTGGGGCACCTCCACCACCTCCACCTCCACCTCCACCTCCAATGCATCAAGCTTCTCCTCCATCAACTCCCATGCGTGGGGCTCCCCCACCACCTCCACCTCCACCTCCACCTATGCCTGGGGCTCCTCCGCCATCGCCACCGCCTATATCGCGTGGTGCTCCACCACCACCACCACCTCCACCAATGTACGGGGCTCCTCCCCCACCACCACCACCTCCTCCAATGCATGGGGCTCCGCCACCACCACCACCCCCTCCAATGCGTGGGGCTCCTCCCCCACCCCCACCCCCTCCAATGCATGGTGTTCCTCCACCACCACCCCCTCCAATGCATGGCCCCCCTCCCCCACCTCCACCTCCAGGCGGTGGTAGAGCCCCTCCACCACCTCCCCCTCCCGGCGGTGGTAGAGCCCCTCCACCACCTCCCCCTCCCGGCGGTGGTAGAGCCCCACCACCACCTCCCCCGCCCGGCGGTGGTAGAGCCCCACCACCACCTCCCCCACCCGGGGGTGGTGGAGCACCGGCACCACCTCCCCCTCCTGGTGGAGGTCGTGGAGCACCTGGCCCTCCTAGACCTCCTGGGGTTGGACCTCCTCCACCCCCACCATTAGGTGCTAGAGGAGCTGCTCCACCTGACCCGAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTATCACGCTCGACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACGAGGGCTCTGCAAGGAAGCTTGTGGGAAGAACTACAGAGATATGGCGAGCCTCAAATTGCACCAGAGTTTGACGTCTCTGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGAAAAATCTGGAGGCCGAAGGAAGTCTGTTGGATCCAAAACTGACAAAGTTCACCTGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTCACCAAAGTAAAGATGCCACTACCTGATATGATGGCTGCAGTGCTAGCAATGGATGAGTCAGTTTTAGACGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCTACCAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATATGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTCGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAATTTGGCTCTCAGATAGTAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAATTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAACACACTAAATCAAGGAACAGCGAGGGGTTCTGCAGTCGGTTTCAAGTTGGATAGTCTTTTAAAGCTTGCGGATACACGTGCTTCTAATAATAAGATGACGCTCATGCATTATCTTTGCAAGGTCCTTGCTTCGAAGACACCGGCTCTTCTAAATTTTCATTTGGACCTGGGTAGCCTCGAGGCAGCAACCAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATCAAGGGGTTGGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAGTTTTTCGAAAGACGCTGAAAGGATTTATTGCTATTGCTGAGACAGAGGTGGCATCGGTGACAAATCTATACTCTACTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCGGCTCGTTGTCCGTTTGAGCAGGTTACAGTGACACTATTGAACTTTGTGAGACTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCTGAATTGGAAAAGAAAAAGGCCGATAAGGAAGCTGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAAAAGAGCGTGAAATAG 4839 48.19 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSSLNPQPSQLRYLQYISRRNLGSDWPPSDTPLILDCLILRVLPLFDGGKGCRPVVRIYGQDPSAPANRTSKLLFSTPIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRVMFHTAFVRSNIMILNRDEVDVLWDARDQYPKDFRVEALFLDADAVVPNLTASFDDEDGNETGAASPEEFFEVEEIFSNVMDGQEAKGSNDPHVVNHVNRKEEWKEDFDPPAFQDCASDDGNLKHYKKSDFDAVKDITVDDVKYKLDENIYSELNAVKDIAVDDGEMNSNSFLVATNVPTHVKVQGLVDDAYEKFEDMEEKDDGRDTSPEKLENKVLQKKLSADGSRQKSEKLQTPIPKKQPVSSGKPTNDMGLTKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIASSKDVNANSKTKATATLDSLVSSDVFTERKNYKVDTVRPSHSAPGNLMHGPSSPVESIGETPSSSEILKPSHSDVQLENSVFPHSSTQPSWEKIYSSVDTGKVTGSIPLPLPSSVDMLSTLKNIARTSLLASSHKEISLSPPPHPPPPPSMKHEALIPPPPPPPPIISGHGASPAPPPPPPPPPPPPPPPPLMPDAFPSPSLMKTVPPPPPPPPPPMYGASPTLSLIHQAPSSMHRASPPPPPPPPPSMRGVPPPPPPPTPPSMYGASLPPPPPPPPSMYGASPPPPPPPPPPPSTCGASPPPPPPPPPSMYGALHPPPPSPPPSMYGSPSPPPPPPPLPSSMFGATSPLTPIMRGIPSPPPPPSMCGAPPPPPPPPPPPMHQASPPSTPMRGAPPPPPPPPPPMPGAPPPSPPPISRGAPPPPPPPPMYGAPPPPPPPPPMHGAPPPPPPPPMRGAPPPPPPPPMHGVPPPPPPPMHGPPPPPPPPGGGRAPPPPPPPGGGRAPPPPPPPGGGRAPPPPPPPGGGRAPPPPPPPGGGGAPAPPPPPGGGRGAPGPPRPPGVGPPPPPPLGARGAAPPDPRGLSSGRGRGLSRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPAEKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQIVEFKKSLNTVNSACDEVRNSTKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEAATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEVFRKTLKGFIAIAETEVASVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKADKEAEMENAKGISLTKKSVK* 1613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1613373 1627296 - CsaV3_1G002600.1 Csa01g00260 514757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00260 1612 MobiDBLite consensus disorder prediction 524 568 - -
Csa01g00260 1612 Gene3D Protein tyrosine phosphatase superfamily 14 205 IPR029021 -
Csa01g00260 1612 Gene3D - 206 336 - -
Csa01g00260 1612 Pfam Formin Homology 2 Domain 1207 1574 IPR015425 -
Csa01g00260 1612 CDD PTP_PTEN-like 16 190 - -
Csa01g00260 1612 PANTHER FORMIN-J 1 827 - -
Csa01g00260 1612 PANTHER FORMIN-J 979 1605 - -
Csa01g00260 1612 SMART it6_source 749 1610 IPR015425 -
Csa01g00260 1612 Coils Coil 1575 1604 - -
Csa01g00260 1612 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 843 951 - -
Csa01g00260 1612 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 493 523 - -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 962 1183 - -
Csa01g00260 1612 PRINTS Proline rich extensin signature 815 831 - -
Csa01g00260 1612 PRINTS Proline rich extensin signature 748 760 - -
Csa01g00260 1612 PRINTS Proline rich extensin signature 766 782 - -
Csa01g00260 1612 PRINTS Proline rich extensin signature 845 870 - -
Csa01g00260 1612 PRINTS Proline rich extensin signature 786 798 - -
Csa01g00260 1612 Coils Coil 1481 1501 - -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 493 577 - -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 1588 1602 - -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 644 675 - -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 1588 1612 - -
Csa01g00260 1612 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Csa01g00260 1612 SMART PTEN_C2_2 198 1312 IPR014020 -
Csa01g00260 1612 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Csa01g00260 1612 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1276 1601 - -
Csa01g00260 1612 Gene3D Formin, FH2 domain 1200 1586 IPR042201 -
Csa01g00260 1612 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1202 1600 IPR015425 -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 740 1213 - -
Csa01g00260 1612 MobiDBLite consensus disorder prediction 747 828 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00571 Csa01g00260 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00260 Csa-Chr1:1613373 Csa04g02634 Csa-Chr4:25716565 0 dispersed
Csa02g01413 Csa-Chr2:13503958 Csa01g00260 Csa-Chr1:1613373 5.16E-32 dispersed
Csa06g02244 Csa-Chr6:20168345 Csa01g00260 Csa-Chr1:1613373 5.15E-26 dispersed
Csa01g00260 Csa-Chr1:1613373 Csa01g00571 Csa-Chr1:3670613 5.75E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00260 - - cmo:103494331 1374.76