Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00264 ATGAAGGAGAAAGCTGACACTGATAATCAATCATGGCATCTTCCAATTCTCATTTTCTTCATCTTAATCACAGGTAGGATTGTCGAGGGACAAGAATTGTTGAGAGATAATACAGAAGTTTTGTTACAGTTGAAATCATTTTTAGAAGAACACAATCCCATTAAACGAGGAAAATATTCGTCTTGGAATTTGGAGAGTTCACCCTGTTCTTGGGCTGGAATATCCTGTAATCAGAACAAGTCCCAAGTCATCGGAATTGACCTTTCAAACGAAGATATTTCCGGCAAAATTTTTCATAATTTCTCTGCCTTGTCTGAGTTGACGGACCTTGACCTCTCTAGAAACACTCTCTCCGGCGAAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGAAACTGAATTTGTCACACAACATCATCGACGACAAGTTGAACTTGTCAGGTTTGATCAATATTGAGACTCTGGATTTGTCGGTCAACCGAATTTGGGGAGAAATAAGGTTGAATTTTCCAGGCATTTGCCGGACTTTGATGTTCTTTAATGTTTCTGGTAATAATCTCACTGGTAGGACGGATGACTGTTTTGATGAGTGCTGGAATTTGCAACATGTGGATTTAAGCTCCAACGAATTCAGTGGAGGATTGTGGAGTGGGTTGGCGAGGACTCGGTTTTTTTCGGCGTCGGAGAATAAACTTTCTGGTGAAGTTTCGCCGGCGATATTTACAGGGGTTTGTAATTTGGAGGTGTTGGACTTGTCAGAGAATGCGCTTTTCGGCGGAGCTCCGGCGGAGGTTTCCAATTGTGGGAATTTATCTTCTTTGAATCTGTGGGGGAACCAATTTTCTGGGAAGATTCCGGCGGAAATGGGAAGAATTTCGGGTTTGCAGAATTTGTATCTAGGAAAGAACAATTTTTCTCGGGAAATTCCAGAATCCCTTTTGAATTTGAGCAATTTGGTGTTTCTTGATTTGAGCAAGAACCATTTCGGAGGGGACATTCAAGAGATTTTCGGAAGGTTTACACAGGTGAGATTTCTTGTTCTTCATGGAAATTTTTACACTGGAGGGATTCATTCTTCTGGGATTCTTAAGTTGCCAAGAGTTGCTCGTTTGGATTTGAGTTTCAACAACTTTTCAGGTCCATTGCCTGTGGAAATCTCTGAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAATCAGTTCAATGGGAACATTCCATCAGAATATGGGAACTTGAAGAATCTTCAAGCTCTTGACCTTTCATTCAACAGATTAAATGGGTCGATCCCAAGCAGCTTTGGGAACTTGACTTCACTCTTGTGGCTAATGCTGGCAAACAACTCTTTGACAGGTGAAATCCCCAGGGAGCTAGGAAGTTGTTCTAGCTTGTTGTGGTTGAACCTTGCCAACAATAAGCTACATGGGCGCATTCCGTCTGAGCTAACGAACATTGGAAAAAATGCCACGGCGACATTCGAAATTAATCGACGAACTGAAAAGTTCATCGCTGGATCAGGGGAATGCTTGGCAATGAAGAGATGGATTCCAGTAGACTACCCTCCTTTCAGCTTTGTCTACACAATCCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGATTGTTGAAAGGGTATGGCCTTTTCCCATTTTGCAGCAAAATAAGGACATTGCAAATCTCTGGTTATGTTCAACTGACTGGGAATCAGTTCAGTGGTGAGATACCAAATGAGATTGGAATGATGAAAAACTTCAGTATGTTGCATTTGAGTTTCAACAATTTCAGTGGGAAACTCCCTCCACAGTTGGGATCTCTGCCATTGGTTGTTCTAAACATATCGGACAACAATTTTTCAGGCGAGATCCCGATGGAGATTGGAGACCTTAAGTGCTTACAGAATCTTGATTTATCGTACAACAATTTCTCTGGCATGTTCCCTCGAAGTTTTGTCAACTTGAATGAGCTTAACAAGTTCAACATCTCATACAATCCTCTCATAACTGGGGAAGTAATTCCAAGTGGGCAATTCTCAACGTTCGACAAGGACGCGTATCTCGGCAATCCTCTTTTGCGCCTTCCTTCTTTCTTCAACACAACCCCACCTAAGTCAGCAGGCAACCCAAGAACGGCAGGATCATCAAAAAGGAATTCAAGGCTAGTTGGAATGTTGGCTTCTTTATCCTTGATCCTTGCTTTTTTGGTATTTGGTACATTTTCTCTTATAGTTTTCTTAATGGTGAGAAGCTCAGATGAATCACGAGGATTTCTCTTGGAAGATATAAAGTATATAAAAGACTTTGGTTCAAGTTCTCATAGCTCATCCCCATGGTTTTCAAATACGGTTACGGTCATTCGTCTCGATAAAACGGTTTTTACACATGCTGATATTCTAAAAGCCACTGGGAACTTTTCAGAGGATAGGGTGATTGGTAAAGGAGGATATGGAACAGTTTACAGAGGAATGCTACCTGATGGAAGGCAAGTGGCAGTGAAGAAGCTTCAAAGAGAAGGAGTTGAAGGTGAAAGAGAGTTCCAAGCTGAAATGCAGATTCTTACTGGCAATGGCTTCAACTGGCCGCACCCAAACCTTGTTCAACTTTACGGATGGTGTCTTGATGGGTCGGAGAAAATATTGGTCTATGAGTACATGGAAGGAGGGAGCTTGGACGATCTTATATTGGACAGACTCAGATTAAACTGGCGGCGACGCATTGATCTTGCGATCGATGTGGCACGGGCATTGGTTTTTCTACACCATGAGTGTTTCCCCTCAGTTGTGCATCGTGATGTTAAGGCCAGTAATGTTTTGCTCGACAAAGACGGACGAGGACGGGTGACAGACTTCGGCTTGGCTAGAATTATGGATGTAGGAGACAGCCATGTGAGTACCATGGTGGCTGGAACCATTGGTTATGTAGCACCAGAATATGGACAAACATGGAAAGCTACTACAAAGGGTGATGTATATAGTTTTGGAGTTTTAGCCATGGAACTTGCTACAGCAAGACGAGCACTTGACGGAGGGGAAGAGTGTCTAGTTGAATGGGCCAAAAGGGTGATGGGAAATGGAAGACATGGGTTGAGTAGAGCAGTAATACCGGTTGCAGTTTTGGGATCAGGCCTTGTCGAGGGGGCTGACGAGATGTGCGAGCTGCTCAAGATTGGGGTAAGGTGCACAAACGAAGCACCATCAGCAAGACCGAATATGAAGGAAGTTCTAGCTATGTTGATCGACATCATAGGCTTAAGAGGGGGGGATGAATTCAAACACATCTTCTCCCCTCCATCCTTGTGA 3300 42.97 MKEKADTDNQSWHLPILIFFILITGRIVEGQELLRDNTEVLLQLKSFLEEHNPIKRGKYSSWNLESSPCSWAGISCNQNKSQVIGIDLSNEDISGKIFHNFSALSELTDLDLSRNTLSGEIPGDLNNCRNLRKLNLSHNIIDDKLNLSGLINIETLDLSVNRIWGEIRLNFPGICRTLMFFNVSGNNLTGRTDDCFDECWNLQHVDLSSNEFSGGLWSGLARTRFFSASENKLSGEVSPAIFTGVCNLEVLDLSENALFGGAPAEVSNCGNLSSLNLWGNQFSGKIPAEMGRISGLQNLYLGKNNFSREIPESLLNLSNLVFLDLSKNHFGGDIQEIFGRFTQVRFLVLHGNFYTGGIHSSGILKLPRVARLDLSFNNFSGPLPVEISEMKSLEFLILAYNQFNGNIPSEYGNLKNLQALDLSFNRLNGSIPSSFGNLTSLLWLMLANNSLTGEIPRELGSCSSLLWLNLANNKLHGRIPSELTNIGKNATATFEINRRTEKFIAGSGECLAMKRWIPVDYPPFSFVYTILTRKSCRSIWDRLLKGYGLFPFCSKIRTLQISGYVQLTGNQFSGEIPNEIGMMKNFSMLHLSFNNFSGKLPPQLGSLPLVVLNISDNNFSGEIPMEIGDLKCLQNLDLSYNNFSGMFPRSFVNLNELNKFNISYNPLITGEVIPSGQFSTFDKDAYLGNPLLRLPSFFNTTPPKSAGNPRTAGSSKRNSRLVGMLASLSLILAFLVFGTFSLIVFLMVRSSDESRGFLLEDIKYIKDFGSSSHSSSPWFSNTVTVIRLDKTVFTHADILKATGNFSEDRVIGKGGYGTVYRGMLPDGRQVAVKKLQREGVEGEREFQAEMQILTGNGFNWPHPNLVQLYGWCLDGSEKILVYEYMEGGSLDDLILDRLRLNWRRRIDLAIDVARALVFLHHECFPSVVHRDVKASNVLLDKDGRGRVTDFGLARIMDVGDSHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGVLAMELATARRALDGGEECLVEWAKRVMGNGRHGLSRAVIPVAVLGSGLVEGADEMCELLKIGVRCTNEAPSARPNMKEVLAMLIDIIGLRGGDEFKHIFSPPSL* 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1653204 1657278 + CsaV3_1G002640.1 Csa01g00264 514761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00264 1099 Gene3D Ribonuclease Inhibitor 34 218 IPR032675 -
Csa01g00264 1099 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 1087 - -
Csa01g00264 1099 Pfam Protein kinase domain 806 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00264 1099 Gene3D Ribonuclease Inhibitor 544 705 IPR032675 -
Csa01g00264 1099 Gene3D Transferase(Phosphotransferase) domain 1 885 1085 - -
Csa01g00264 1099 Gene3D Phosphorylase Kinase; domain 1 770 884 - -
Csa01g00264 1099 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 1087 - -
Csa01g00264 1099 CDD STKc_IRAK 811 1081 - -
Csa01g00264 1099 SUPERFAMILY RNI-like 80 287 - -
Csa01g00264 1099 SMART LRR_typ_2 245 269 IPR003591 -
Csa01g00264 1099 SMART LRR_typ_2 104 128 IPR003591 -
Csa01g00264 1099 SMART LRR_typ_2 293 317 IPR003591 -
Csa01g00264 1099 SMART LRR_typ_2 414 437 IPR003591 -
Csa01g00264 1099 SMART LRR_typ_2 630 653 IPR003591 -
Csa01g00264 1099 SMART LRR_typ_2 438 462 IPR003591 -
Csa01g00264 1099 SMART LRR_typ_2 366 390 IPR003591 -
Csa01g00264 1099 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Csa01g00264 1099 SMART serkin_6 805 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00264 1099 SUPERFAMILY Protein kinase-like (PK-like) 785 1078 IPR011009 -
Csa01g00264 1099 SUPERFAMILY L domain-like 220 482 - -
Csa01g00264 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Csa01g00264 1099 PRINTS Leucine-rich repeat signature 107 120 - -
Csa01g00264 1099 PRINTS Leucine-rich repeat signature 414 427 - -
Csa01g00264 1099 ProSiteProfiles Protein kinase domain profile. 805 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00264 1099 Pfam Leucine rich repeat 609 667 IPR001611 GO:0005515
Csa01g00264 1099 Pfam Leucine rich repeat 416 475 IPR001611 GO:0005515
Csa01g00264 1099 Gene3D Ribonuclease Inhibitor 362 509 IPR032675 -
Csa01g00264 1099 Gene3D Ribonuclease Inhibitor 219 361 IPR032675 -
Csa01g00264 1099 ProSiteProfiles Leucine-rich repeat profile. 130 151 IPR001611 GO:0005515
Csa01g00264 1099 SUPERFAMILY L domain-like 549 669 - -
Csa01g00264 1099 ProSitePatterns Protein kinases ATP-binding region signature. 811 834 IPR017441 GO:0005524
Csa01g00264 1099 Pfam Leucine Rich repeat 127 144 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00264 - - - csv:105436350 2183.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00264 Csa-Chr1:1653204 Csa06g02833 Csa-Chr6:24710337 4.59E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77737 PF00069 Pkinase 2.80E-42 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00264 Csa_Chr01 FPKM 1.053498 1.027392 2.392675 2.139377 4.122242 3.403253 4.514865 1.865238 1.483312 1.797055