Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00268 ATGAAAATGTATAACCGGCTTCTGCCTTTCTCGTATAGAATTATTCGAAGGTCTCGGGTCCAACAAGAAATTTGTACAATCTCGAACTTGGATTTTTTAGAATCAGAAATGTTGAAATTTGTACACACCCAAGCAATGGATCTTCCGTTTCAGGCAACTAACGGTAGCAAAATTCCTGATTACAATGACGTGCGAAGAGGGCATTTCCTCATGAAACTCATAGACGACTCTGTTTCGCGTAATGGGTTCGAATCTATTGCTCGTATTTTCTCTAAGTATCGTGGTTCTATCAATTCTCAACAGTGTAACTCGATGATCAGGACTTATTTGGATTTGAATAAGCATTTAAATTCTCTGTACATTTTTGCCCTTATGCATAAGTTTAGTATTCTGCCCGATTCATCCACTTTTCCTGCTGTTCTTAAAGCAACTGCGCAGCTATGTGATACTGGAGTTGGAAAAATGATACATGGTATTGTTATTCAGATGGGTTTTATTTGTGATGTCTACACAAGTACCGCTTTAGTTCATCTGTATTGTACTTGTTTGTCTATATCTGATGCTTCTCAGTTGTTCGACGAAATGCCCGAGAGAAATGCAGTTACTTGGAATGCTTTGATTACTGGTTATACTCATAATAGAAAGTTTGTGAAAGCTATCGATGCTTTTCGAGGAATGTTGGCAGATGGGGCTCAACCGAGTGAGAGAACCGTGGTTGTAGTTCTATCGGCTTGTTCTCATTTGGGAGCTTTTAATCAGGGAAAGTGGATCCATGAGTTTATTTATCATAATAGGTTGAGACTGAACGTGTTTGTGGGCACAGCTCTTATTGATATGTATGCTAAATGTGGGGCTGTTTATGAGGTCGAGAAGGTCTTCGAAGAAATTAGAGAGAAGAACGTGTATACATGGAATGTCTTGATTTCTGGATATGCCATGAATGGGCAAGGCGATGCAGCTTTGCAGGCTTTTTCTAGGATGTTGATGGAAAATTTCAAGCCAGATGAGGTTACCTTTCTAGGTGTTTTGTGTGCATGCTGTCACCAAGGTCTGGTAACGGAAGGGCGCTGGCAATTCATGAGCATGAAACAACAGTTTGGACTGCAACCAAGGATAGAGCATTATGGATGTATGGTAGACCTACTTGGTCGAGCGGGATTGTTGGAGGAAGCTCTAGAGTTGATCCAATCCATGAGCATAGAGCCAGACCCTATCATTTGGAGGGCTTTGCTTTGTGCTTGCAGAGTCCATGGGAATACGAAATTGGGTGAATATATTATCAAAAGACTTATAGAACTAGAACCAAACAATGGGGAAAATTATGTCTTGCTGTCAAATATATACTCAAGAGAACGACGGTGGGCTGAAGTAGGGAAGTTGAGGGGAATGATGAATCTAAGAGGGATCAGAAAAGTCCCTGGTTGCAGTTCAATTGAAATAAACAACGTAGTTTATGAGTTTGTTGCATCAAATGACAGAAAACCAGAATTTGAGGCAATATACAAGCAGTTGGACAATTTGATTAAGAAATTGAAAGAAAATGGTTATGTTACAGGCACGGACATGGCTTTATATGATATTGAGAAAGAAGAGAAAGAGCATTCTGTGATGTACCATAGTGAGAAACTTGCTTTAGCATTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAATCTAAGAATTTGCTTGGACTGCCACGAGTTTTTCAAGGTTTTATCACTCGTCTATAAAAGATATATTGTTGTGAGAGACAGAAACCGTTTCCACCATTTTTATGAAGGTTTCTGTTCGTGCCGAGACTATTGGTGA 1824 39.64 MKMYNRLLPFSYRIIRRSRVQQEICTISNLDFLESEMLKFVHTQAMDLPFQATNGSKIPDYNDVRRGHFLMKLIDDSVSRNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1668697 1670520 + CsaV3_1G002680.1 Csa01g00268 514765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00268 607 Pfam DYW family of nucleic acid deaminases 515 607 IPR032867 GO:0008270
Csa01g00268 607 Gene3D Tetratricopeptide repeat domain 80 256 IPR011990 GO:0005515
Csa01g00268 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Csa01g00268 607 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Csa01g00268 607 TIGRFAM PPR: pentatricopeptide repeat domain 375 399 IPR002885 -
Csa01g00268 607 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Csa01g00268 607 Gene3D Tetratricopeptide repeat domain 257 355 IPR011990 GO:0005515
Csa01g00268 607 Pfam PPR repeat family 299 348 IPR002885 -
Csa01g00268 607 Pfam PPR repeat family 199 246 IPR002885 -
Csa01g00268 607 Coils Coil 494 514 - -
Csa01g00268 607 PANTHER - 77 581 - -
Csa01g00268 607 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 77 581 - -
Csa01g00268 607 Pfam E motif 417 479 IPR046848 -
Csa01g00268 607 Pfam PPR repeat 374 398 IPR002885 -
Csa01g00268 607 Gene3D Tetratricopeptide repeat domain 356 434 IPR011990 GO:0005515
Csa01g00268 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Csa01g00268 607 SUPERFAMILY TPR-like 295 456 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00268 - - - csv:101215826 1228.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00268 Csa-Chr1:1668697 Csa02g02380 Csa-Chr2:21132511 2.95E-161 dispersed
Csa01g00268 Csa-Chr1:1668697 Csa01g00108 Csa-Chr1:617649 6.61E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00268 Csa_Chr01 FPKM 0.648855 0.381862 0.613775 0.665956 5.595023 3.213261 4.843353 0.422559 0.0 0.0