Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00277 ATGGGGTGCTATGCTAGCAAGAATGCAGATTCAAAGGCCAGCAGAGTGGCTCGATGGCGAGCTACTGGTATCGTGGCTTTGCGAGATTCAAAGTTGAAGACTTTTCCTGACGAAGTTCTTGACATGGAAAGATCTGTTCGCACCCTTGATTTAACAAACAATAAAATAGTTGATATTCCCATGGAAGTCTGCAAATTAATAAACATGCAGCGTCTGGTATTGGCAGATAACCTTATTGAGCGTCTACCAATGAATTTAGGGAAGCTACAATCTCTAAAAGTTATGATACTTGATGGAAATCACATTACAACATTACCTGATGAATTGGGTCAGCTAGTACGACTTGAACGTTTATCTGTCTCCCGAAATCTGCTTTCGTCCTTACCTGAAACCATTGGAAGCTTGCGGAATTTATTGCTTATCAATGTGTCAAATAACAAGTTAAAATCTCTCCCAGAATCAATAGGAAGTTGCTTCTCCCTCGAAGAATTGCAAGCAAATGATAATCTTATGGAAGACCTTCCCTCGTCTTTGTGCAATCTGATTCACCTGAAGTCGTTGCGTTTAGATAATAACAATATTGGTCAGTTACCATCAAATCTGTTGAAAGATTGCAAAGCATTGCAAAATGTATCTTTGCATGGTAATCCAATTTTAATGGATCAATTTCAGCAGATGGAAGGATTTGAGGATTTTGAAGCTAGGAGAAAAAAGAAATTTGACAAACAAATTGATTCCAATGTCATGATTAGCTCTAAGGGCCTTGATGAAGGCGTCGATCTGTAA 786 38.68 MGCYASKNADSKASRVARWRATGIVALRDSKLKTFPDEVLDMERSVRTLDLTNNKIVDIPMEVCKLINMQRLVLADNLIERLPMNLGKLQSLKVMILDGNHITTLPDELGQLVRLERLSVSRNLLSSLPETIGSLRNLLLINVSNNKLKSLPESIGSCFSLEELQANDNLMEDLPSSLCNLIHLKSLRLDNNNIGQLPSNLLKDCKALQNVSLHGNPILMDQFQQMEGFEDFEARRKKKFDKQIDSNVMISSKGLDEGVDL* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1744354 1749683 + CsaV3_1G002770.1 Csa01g00277 514774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00277 261 Gene3D Ribonuclease Inhibitor 4 144 IPR032675 -
Csa01g00277 261 SMART LRR_bac_2 112 131 - -
Csa01g00277 261 SMART LRR_bac_2 181 200 - -
Csa01g00277 261 SMART LRR_bac_2 160 177 - -
Csa01g00277 261 SMART LRR_bac_2 89 108 - -
Csa01g00277 261 SMART LRR_bac_2 135 154 - -
Csa01g00277 261 SMART LRR_typ_2 135 158 IPR003591 -
Csa01g00277 261 SMART LRR_typ_2 181 204 IPR003591 -
Csa01g00277 261 SMART LRR_typ_2 66 88 IPR003591 -
Csa01g00277 261 SMART LRR_typ_2 89 111 IPR003591 -
Csa01g00277 261 SMART LRR_typ_2 112 134 IPR003591 -
Csa01g00277 261 PANTHER LEUCINE-RICH REPEAT-CONTAINING 7 253 - -
Csa01g00277 261 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
Csa01g00277 261 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 7 7 253 - -
Csa01g00277 261 Gene3D Ribonuclease Inhibitor 145 254 IPR032675 -
Csa01g00277 261 SUPERFAMILY L domain-like 25 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00277 - - - csv:101206028 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00277 Csa-Chr1:1744354 Csa06g01400 Csa-Chr6:11966113 7.48E-50 dispersed
Csa01g00277 Csa-Chr1:1744354 Csa01g02196 Csa-Chr1:19051102 5.55E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g624 . . . . . . . . . . Cma10g00225 . Car10g00209 Car11g00122 . . Cpe04g01470 Bhi02g00262 Tan09g2060 . . . . . Cla06g01553 Cam06g1716 Cec06g1777 Cco06g1776 Clacu06g1684 Cmu06g1629 Cre06g2440 . . Cone13ag0044 Cone19ag0049 . . . . . . . . . . . . . Cmo10g00236 Cmo11g00201 . . . . . Cpe18g00768 . . . . . . . . . . . . . . Lsi06g01427 Csa01g00277 Chy02g02455 Cme02g01843
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008328 2 2 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00277 Csa_Chr01 FPKM 7.837458 9.856141 11.994534 10.863468 9.361519 9.707774 8.80349 32.141476 28.734146 30.831871