Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00282 ATGGCTAAATCGGCCCTTGAGACTTACGGCCATGATCTCGTGGAAAAAGCAGAGAAACAAACACTCGATCCAATCTTCGGCCGCCACAAAGAAATCTGCCGTCTCCTAACCATCCTCTGCCGCAAAACCAAATGCAACCCCATTCTAATAGGCGAACCCGGCGTCGGAAAAACAGCTATCGTTGAAGCACTCGCACAGAAATTCGCCGCCGGAAATGTCCCGGCCAAGCTCTCCGGCGCAAGGATCGTGGAACTGGACATGGGAGCCATAATGGCCGGAACAATTTGGAGGGGGCAATTGGAAGAGAGATTGAAGGATGTGATGACGGAAGTGAAAGGATCGGAAGGAAAAGTGATAGTGTTTATAGACGAAATTCATATGTTGGTCCGAAGTGATCATCAGGGAACCGCAGCGGAGATTCTGAAACCGGCGCTGGGAAGAGGGGGTTTCCGGTGCATCGGAGCGACGACGTTGAAGGAGTACAAAAGGTATATTGAGAAAGACGGAGCATTGGCGAGGAGATTTAAACAAGTTTATGTGAATGAACCAAGTGTTGAAGATTCGATTAACATTCTCAGAGTTTTGAAGGAGAGATATGAAAAACATCACGTTCTTATAATTAAAGATTCTGCTCTTATTGCTGCTGCAAAATTGTCACATCGCTACATCACAGGGCGACGACTTCCAGACAAAGCAATCGATTTAGTCGACGAAGCAAGTGCATGCATGAGAGTTCAACTCGATACTCAATCTGAAGAACTTGACGAACTTCAAAATGAAAAGTCCAAGCTTGAAGCTGAAGCAAAAAAGGAGCTGAATGACGTGAACAACCAGCTGCAGCCATTGTTATCAAAATACCAAAAACAGAAATCCGAAATGGAAAAACTCACTAAATTGAAGCAAAAGAAACAAGAAATATTAGTCGAGATACAAGCCGCCCAAAAACGTCAAGATTTAATCAGAGCCGCGGATCTCCGACGCCAGAAATTAGATGATGTAGAATTAAAAATCGGTGATGTGGAAAGAAGGATAAGAAAACACGGCTTTATAGAGAAGGACACGGTCGGACCAGAGGAAATAGCGGACGAGGTGAGCCGGTGGACTGGGGTGCCAGTTTCGAGGCTAACCGGGGAAGAGAAAGAGTGGGTTATGGGTTTGGCGGGGCGGTTGAAGAAAAGAGTGGTTGGACAAAATGAGGCAGTTGATTCGGTTGCTGAAGCAGTGATGAGGTTCAGAGCTGGGCTCGCTTTACCGAACCAACCTAATGGTTCGTTTTTGTTTTTGGGTCCGTCAGGGGTTGGGAAGACGGAGCTTGCAAAGGGTTTGGCTCATGAGCTATTTAACGACGAGAATCGTATGGTTCGGATTGACATGTCCGAGTACATGGAGAAACACTCTGTTTCAAGGCTTATTGGTTCTCCACCTGGGTATGTTGGATACCATGAAGGTGGGCAACTAACTGAACCAGTGAAGAGGCGTCCCTACTGTGTAGTTCTATTGGATGAAGTTGAAAAGGCTCATGTGGATGTCTTGAATATTCTGCTTCAAGTTTTGGATGATGGACGGTTGACGGACGGGCAGGGTTCAACGGTGGACTTCAGAAACACAGTGATTATCATGACTTCTAATCTCGGCGCCGGTCATCTTTTTTCTGAAAAGTACTGCCCCATGCAAGTTGCTCGTGAAAGGGTTATCCAAAAGGTGAAAGAACATTTCAAGCCGGAGTTTGTGAACCGGCTAGACGAAATTCTGATTTTCCGGCCACTTTCTAAAATTCAACAAAGGAGAGTCACTAAATCAATGATGAAAGACGTTGCTCGCCGTCTTTCCGAAAAAGGCATTGCCATGGCTGTGACTAAATCCGCTCTTGACTTCGTTCTTGATCAAAGCTTCGATCCGGTTTACGGTGCTAGGCCGATTAGGCGTTGGTTGGAGAAGAAAGTTGTGACGAATATTTCGAAGATGCTAATGAAAGAAGAGATCGGTGAGGAGTACACAGTGTATGTCGATGCCAACGATGATGGAAAAGATTTGAAGTATAATGTGGAGAAAAATAATGGTCTCATTGATGGAATCAGTGACGGGAGATATGAAATCTTGATTCAAATTCCAACTATGGAGAAAAATAATGACGATGAAAGTGAAGAAGCGGAAGGAGGAACCGAAGAGGAGGATGTGGAAACCACGAGTGTTGATAGTGATTAG 2205 45.31 MAKSALETYGHDLVEKAEKQTLDPIFGRHKEICRLLTILCRKTKCNPILIGEPGVGKTAIVEALAQKFAAGNVPAKLSGARIVELDMGAIMAGTIWRGQLEERLKDVMTEVKGSEGKVIVFIDEIHMLVRSDHQGTAAEILKPALGRGGFRCIGATTLKEYKRYIEKDGALARRFKQVYVNEPSVEDSINILRVLKERYEKHHVLIIKDSALIAAAKLSHRYITGRRLPDKAIDLVDEASACMRVQLDTQSEELDELQNEKSKLEAEAKKELNDVNNQLQPLLSKYQKQKSEMEKLTKLKQKKQEILVEIQAAQKRQDLIRAADLRRQKLDDVELKIGDVERRIRKHGFIEKDTVGPEEIADEVSRWTGVPVSRLTGEEKEWVMGLAGRLKKRVVGQNEAVDSVAEAVMRFRAGLALPNQPNGSFLFLGPSGVGKTELAKGLAHELFNDENRMVRIDMSEYMEKHSVSRLIGSPPGYVGYHEGGQLTEPVKRRPYCVVLLDEVEKAHVDVLNILLQVLDDGRLTDGQGSTVDFRNTVIIMTSNLGAGHLFSEKYCPMQVARERVIQKVKEHFKPEFVNRLDEILIFRPLSKIQQRRVTKSMMKDVARRLSEKGIAMAVTKSALDFVLDQSFDPVYGARPIRRWLEKKVVTNISKMLMKEEIGEEYTVYVDANDDGKDLKYNVEKNNGLIDGISDGRYEILIQIPTMEKNNDDESEEAEGGTEEEDVETTSVDSD* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1778618 1781828 + CsaV3_1G002820.1 Csa01g00282 514779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00282 734 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 532 546 IPR001270 GO:0005524
Csa01g00282 734 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 499 517 IPR001270 GO:0005524
Csa01g00282 734 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 470 488 IPR001270 GO:0005524
Csa01g00282 734 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 425 443 IPR001270 GO:0005524
Csa01g00282 734 Pfam AAA lid domain 184 279 IPR041546 -
Csa01g00282 734 Gene3D UVR domain 250 302 - -
Csa01g00282 734 Coils Coil 240 274 - -
Csa01g00282 734 ProSitePatterns Chaperonins clpA/B signature 2. 455 473 IPR028299 -
Csa01g00282 734 SMART AAA_5 43 185 IPR003593 -
Csa01g00282 734 SMART AAA_5 421 563 IPR003593 -
Csa01g00282 734 CDD AAA 416 552 - -
Csa01g00282 734 Gene3D - 351 588 IPR027417 -
Csa01g00282 734 Coils Coil 286 316 - -
Csa01g00282 734 MobiDBLite consensus disorder prediction 705 734 - -
Csa01g00282 734 Gene3D - 589 688 - -
Csa01g00282 734 MobiDBLite consensus disorder prediction 711 734 - -
Csa01g00282 734 PANTHER ATP-DEPENDENT CLP PROTEASE 3 684 - -
Csa01g00282 734 Gene3D - 1 184 IPR027417 -
Csa01g00282 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 369 IPR027417 -
Csa01g00282 734 CDD AAA 26 178 - -
Csa01g00282 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 678 IPR027417 -
Csa01g00282 734 Pfam C-terminal, D2-small domain, of ClpB protein 589 668 IPR019489 -
Csa01g00282 734 Pfam AAA domain (Cdc48 subfamily) 421 583 IPR003959 GO:0005524|GO:0016887
Csa01g00282 734 SMART ClpB_D2_small_2 589 680 IPR019489 -
Csa01g00282 734 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 3 684 - -
Csa01g00282 734 Pfam ATPase family associated with various cellular activities (AAA) 48 158 IPR003959 GO:0005524|GO:0016887
Csa01g00282 734 Gene3D - 186 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00282 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101217495 1361.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00590 Csa01g00282 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00282 Csa-Chr1:1778618 Csa03g02465 Csa-Chr3:22957501 0 dispersed
Csa01g00282 Csa-Chr1:1778618 Csa01g00283 Csa-Chr1:1782096 7.52E-10 tandem
Csa01g00282 Csa-Chr1:1778618 Csa01g00590 Csa-Chr1:3780760 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00282 Csa_Chr01 FPKM 21.677896 24.612013 27.288355 28.508064 24.15612 22.051176 25.10684 30.700874 31.720507 34.5481