Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00287 ATGGACGTTGACGGCTCCGGAACTACGAAATTCAACGGAATCAATGGCGATTCACGGAGGTTAGGAGTTTTATACGACGATAGGATGTGTAAACATCACACACCCGACGGAGACTACCATCCTGAGAATCCTTATCGAATTAGGGCCATTTGGAATAAGTTACACTCCGCTGGCATTCTTCAGAGGTGTGTGGTCTTGAAAGGGAAAGAAGCAGAAGATAAACATATTTTGGCAGTTCACTCCAAAAATCATGTTAAGTTGATTAAGGAAATAAGCTCCAAAGAGTTTGATTCACGAAGAGATAAGATTGCCTCAAAACTTAACTCCATATACTTCAATGAAGGGTCATCCGAAGCTTCTTATCTGGCTGCTGGCTCTGTCATAGATGTTGCTGAAAAAGTAGCAAAAGGAGACTTAGATTCTGGCATTGCGATTGTGAGGCCGCCCGGTCATCATGCTGAACATGATGAAGCTATGGGGTTTTGTTTGTTCAACAATATAGCTGTGGCAGCAAGCTTTATTTTGAATGAAAGACCAGATTTGGGTATTAAGAAAATTTTAATTGTGGATTGGGATGTTCATCATGGCAATGCAACACAAAAGATGTTCTGGGAGGATCCCCGTGTTTTGTTCTTCTCTGTTCACCGGCATGAATATGGAAGTTTCTATCCAGCCACACATGATGGTTTTTATACCAAGGTTGGAGAAGGACCTGGAGCAGGTTATAATATAAATGTCCCATGGGAGAATGGACGATGTGGGGATGCTGACTACCTAGCAGTTTGGGACCATATCTTGCTTCCTGTTGCTGAGGAATACAACCCTGATATGATCATGGTCTCTGCTGGATTTGATGCAGCTGTTGGGGATCCTCTAGGTGGTTGCTGTGTCACACCATATGGATACTCGATTATGTTGAAAAAGTTGATGAATCTTGCACAAGGAAAGATTGTATTGGCCCTGGAAGGAGGATATAATCTCGACTCTATAGCAAGTTCGATGCTTGCCTGTGCGGAATTGCTGCTTGATGGAAGAACTGTGAATAAGCCTCAAGAGACTTATCCATTTGAGTCAACATGGCAAGTGATCCAAGCAGTTCGCCAAGAATTGAGTCCTTTTTGGCCAATTCTTTCAGATGAAATACCAGACAATTTGATCAGTAAAAAGGTGCCACTCCCGGAGGTATTGCTTTCAAGCTCTGATTCAGATGATGAAGCTTCCAATGGTAGATTAAAAAGCCTCGAGGAAGTTCTTCAGGGTATCACATTCTCACAATTGGAAGTTAAGGAAGACAGTCAGGGCCAAGCAGTTAATGTTACTCAGCCTTGGAGATCAGAGCTATCAAAAACTGATATCTGGTATGCTGCATTTGGATCAAATTTGTGGTGCCCAAGATTACTTTGTTATATCAGAGGAGGACAGGTTGAGGGTATGAAGAGATCATGTACAGGTTCAATGGATACTACTCCACCAAAGGAGATTATGTGGAAATCGTTTCCTCATCGTCTATTTTTCGGTCATGAGCATACCAGTACATGGGGCCAAGGGGGAGTTGCTTTTCTTAATCCCGAAAGCAACAGCGAGGAGAAATCTTACTTGTGCTTGTATAGAATTACGCTCGAGCAATTTAACGACCTTTTGTATCAAGAAAATAATGCTAGTAGTTCCCTTTCTGATAACCCTTTATTGGATATAGCTAATTTGAACAAAGTCACAAGCAGCCCTTCCAACTCTGTTGAGGTTCCAACTGGGAAAGGCTGGTACCACAACCTCGTATATTTGGGGAAAGAACGCGATATTCCAATACTAACTATGACATGTTCACATTCGGATATGGAAGACTTTAAAGATGGAAAAATTCCAATCTGTTCGCCAGCAAAAGAGTACGTTAATACCCTTGTTCTAGGCCTTGCAGGAGGGCCACTTTCAAAGGAGGAAGCACTGGAATATATTCGGAATGCTTCAACTAAGCCACTGTAA 1980 42.22 MDVDGSGTTKFNGINGDSRRLGVLYDDRMCKHHTPDGDYHPENPYRIRAIWNKLHSAGILQRCVVLKGKEAEDKHILAVHSKNHVKLIKEISSKEFDSRRDKIASKLNSIYFNEGSSEASYLAAGSVIDVAEKVAKGDLDSGIAIVRPPGHHAEHDEAMGFCLFNNIAVAASFILNERPDLGIKKILIVDWDVHHGNATQKMFWEDPRVLFFSVHRHEYGSFYPATHDGFYTKVGEGPGAGYNINVPWENGRCGDADYLAVWDHILLPVAEEYNPDMIMVSAGFDAAVGDPLGGCCVTPYGYSIMLKKLMNLAQGKIVLALEGGYNLDSIASSMLACAELLLDGRTVNKPQETYPFESTWQVIQAVRQELSPFWPILSDEIPDNLISKKVPLPEVLLSSSDSDDEASNGRLKSLEEVLQGITFSQLEVKEDSQGQAVNVTQPWRSELSKTDIWYAAFGSNLWCPRLLCYIRGGQVEGMKRSCTGSMDTTPPKEIMWKSFPHRLFFGHEHTSTWGQGGVAFLNPESNSEEKSYLCLYRITLEQFNDLLYQENNASSSLSDNPLLDIANLNKVTSSPSNSVEVPTGKGWYHNLVYLGKERDIPILTMTCSHSDMEDFKDGKIPICSPAKEYVNTLVLGLAGGPLSKEEALEYIRNASTKPL* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1800473 1806924 + CsaV3_1G002870.1 Csa01g00287 514784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00287 659 PANTHER HISTONE DEACETYLASE 18 612 - -
Csa01g00287 659 Pfam Histone deacetylase domain 40 339 IPR023801 -
Csa01g00287 659 PRINTS Histone deacetylase superfamily signature 148 171 IPR000286 -
Csa01g00287 659 PRINTS Histone deacetylase superfamily signature 275 285 IPR000286 -
Csa01g00287 659 Gene3D Histone deacetylase domain 14 389 IPR037138 -
Csa01g00287 659 SUPERFAMILY Arginase/deacetylase 19 377 IPR023696 -
Csa01g00287 659 Gene3D - 441 657 - -
Csa01g00287 659 PANTHER BNAA09G05590D PROTEIN 18 612 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00287 K11406 HDAC4_5; histone deacetylase 4/5 [EC:3.5.1.98] - csv:101207819 1340.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00287 Csa-Chr1:1800473 Csa01g03237 Csa-Chr1:28511607 3.59E-76 dispersed
Csa01g00287 Csa-Chr1:1800473 Csa07g00228 Csa-Chr7:1802629 4.44E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g359 Blo04g00809 . . Bda15g00544 Bpe12g00667 . . . . . Cma10g00300 . Car10g00285 . . . . . . . . . . . . . . . . . . . . Cone13ag0296 . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00322 . . . . . . . . . . . . . . . . . . . . . . Csa01g00287 Chy02g02448 .
Vvi17g652 . . . Bda15g00620 Bpe12g00526 . . . . . . Cma11g00075 . . Sed08g0265 . . Bhi02g00691 Tan09g2049 Cmetu02g2011 . . . . Cla06g01544 Cam06g1704 . Cco06g1765 Clacu06g1671 Cmu06g1617 Cre06g2430 . Cone16ag0204 . . . . . . . . . . . . . . . . . . . . . . Cpe18g00702 . . . . . . . . . . . . . . Lsi06g01419 Csa01g00287 Chy02g02448 Cme02g01835
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010219 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00287 Csa_Chr01 FPKM 7.378277 9.213085 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0