Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00289 | ATGGCGTCCGCTAAGCGATGCCATTACGAGGTCCTCGGCCTACACATCGACTGTACCCCCGATGAAATTCGATCGGCGTACCGTAAGCTAGCTCTCCAGCGCCACCCTGATAAGCTTGTCCAGTCCGGTTTGTCACAAGCTGATGCCACCGCTCAGTTTCAAGAGCTTCAGCACGCTTACGAGGTTCTTTCCGATCCTAAAGAACGCGCCTGGTACGATTCCCATCGTTCCCAAATCCTCTTTTCTGATGCCGGATCGGTTAATTCCAGCTCTGTTGTTCCTAATCTCTTTCCGTTCTTCTCTAATACTGTTTATTCTGGCTATTCCGATTCTGGACGAGGGTTCTATAAGATCTATTCTGACCTTTTTGATAAAATTTATGGGAATGAGATTAATTTCGCTAAGAAATTAGGATTGCGTTTGGATATGGTTCGTGAAGCTCCGGTTATGGGGAATTTGGATAGTCCGTATACGCAGGTGACTGCGTTTTATAATTACTGGCTTGGGTTTTGTACGGTTATGGATTTTTGCTGGGCTGATCAGTACGATGTCATGGCCGGCCCCAACCGGAAATCGAGGAGGTTAATGGAGGAGGATAACAAGAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAATGAGACAGTGAGAGGTTTGGCTGAGTTTGTGAAGAAGAGAGATAAAAGGGTGATTGATATGGCTATGAAAAGGAACATGGAAATGGAGAAGAAGAAGGAAGAGGAGAGGGAAAGGAAAAAAAGGTTAGAGAGGGAGAAGATGGAGAAGCTTAGAACATATGAGGAACCTGATTGGGCAAAGGTTGAGGAAGTTGAGGAGGATGAAGAAGATGTGTTTGAGGAAGAGAATAGGAGAGGGAAAGAGCTGTACTGTGTTTTGTGTGGTAAGAAGTTCAAAAGTGAAAAGCAATGGAAGAATCACGAACAGTCGAAAAAGCACAAGGAGAAGGTTGCAGAGTTCAAAGAATCACTAGATGATGAGGATGAATCTGAAGAATTTGTTGATGAAGGGGAAGGTGAAGGTGAAGAAGAAACTACACGGCAGGATGATGAGGTTGATAAACTAGGGGAGGAGTTCAAGGAAAGTTTTGATATTGAGGAAGAAGAAACCGAAAGTGGTGGTGGACTTAGTGGGAGTGAATACGACGATGTTCATGAAGTTGATAGATCAGATATGGTTGGTGAGGCACTTGGATCGAATGACGACGACGAAAGAGATATTCTTGAAGCAATGGCAGCTGGACTGCGAAATAGGAAAAGTGCAGCTTCAGTGAATCAGCCTGAAGCTTCCCCAGTCAAACCTCATTTTGAAAATGAGAACGATGAGCCAAATCCAGCAGAGTTTGAAAATGGTAAGAGAGGAAAAAAGAGTCGTCGAGCCAAAAAGAAGGGCAAGGGAAACGATGAAGCTATGAATGAAACAGATTCTCGAAATTACAAAACTAACGGAGATGATTCATCACATCAGCAGGATTCCACTTCCAATTCGTTGCATAATGATGAAAATAGTGATAAGGGGGCCAGTGAGTTGGCCAAAGAACAAAGAGCTTCAAGTAAATCCGCTGATCGGAAAGCAGTTGCACAGAATGACCTGAAGATCAACTCTAGACACTCATCTAAAGGAAAGAAATCCAAGTCAACATCTAAGGATTCTGGCAATTCATGTGACACATGTGGAGAGGAATTCGACTCAAGGAATAAACTGCATAAGCATTTGGGAGCCACAGGACATGCTTCTTTAAAATATCGATGA | 1767 | 43.75 | MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYSDLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWADQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEMEKKKEEERERKKRLEREKMEKLRTYEEPDWAKVEEVEEDEEDVFEEENRRGKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEGEEETTRQDDEVDKLGEEFKESFDIEEEETESGGGLSGSEYDDVHEVDRSDMVGEALGSNDDDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGKRGKKSRRAKKKGKGNDEAMNETDSRNYKTNGDDSSHQQDSTSNSLHNDENSDKGASELAKEQRASSKSADRKAVAQNDLKINSRHSSKGKKSKSTSKDSGNSCDTCGEEFDSRNKLHKHLGATGHASLKYR* | 589 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1809249 | 1812265 | - | CsaV3_1G002890.1 | Csa01g00289 | 514786 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 306 | 566 | - | - | |
Csa01g00289 | 588 | ProSitePatterns | Nt-dnaJ domain signature. | 53 | 72 | IPR018253 | - | |
Csa01g00289 | 588 | SUPERFAMILY | beta-beta-alpha zinc fingers | 286 | 339 | IPR036236 | - | |
Csa01g00289 | 588 | Gene3D | DnaJ domain | 1 | 89 | IPR036869 | - | |
Csa01g00289 | 588 | Gene3D | Classic Zinc Finger | 280 | 345 | - | - | |
Csa01g00289 | 588 | Coils | Coil | 588 | 588 | - | - | |
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 439 | 459 | - | - | |
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 468 | 489 | - | - | |
Csa01g00289 | 588 | CDD | DnaJ | 7 | 65 | IPR001623 | - | |
Csa01g00289 | 588 | SMART | dnaj_3 | 6 | 68 | IPR001623 | - | |
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 507 | 535 | - | - | |
Csa01g00289 | 588 | Coils | Coil | 193 | 213 | - | - | |
Csa01g00289 | 588 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 560 | 582 | IPR013087 | - | |
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 386 | 417 | - | - | |
Csa01g00289 | 588 | SUPERFAMILY | Chaperone J-domain | 4 | 98 | IPR036869 | - | |
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 490 | 506 | - | - | |
Csa01g00289 | 588 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 296 | 318 | IPR013087 | - | |
Csa01g00289 | 588 | Pfam | Zinc-finger double-stranded RNA-binding | 294 | 319 | IPR022755 | - | |
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 329 | 352 | - | - | |
Csa01g00289 | 588 | Coils | Coil | 230 | 264 | - | - | |
Csa01g00289 | 588 | SMART | ZnF_U1_5 | 291 | 325 | IPR003604 | GO:0003676|GO:0008270 | |
Csa01g00289 | 588 | MobiDBLite | consensus disorder prediction | 306 | 328 | - | - | |
Csa01g00289 | 588 | PANTHER | DNAJ PROTEIN JJJ1 HOMOLOG | 1 | 588 | IPR044648 | - | |
Csa01g00289 | 588 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 558 | 587 | IPR013087 | - | |
Csa01g00289 | 588 | Pfam | DnaJ domain | 8 | 73 | IPR001623 | - | |
Csa01g00289 | 588 | PRINTS | DnaJ domain signature | 9 | 27 | IPR001623 | - | |
Csa01g00289 | 588 | PRINTS | DnaJ domain signature | 27 | 42 | IPR001623 | - | |
Csa01g00289 | 588 | PRINTS | DnaJ domain signature | 48 | 68 | IPR001623 | - | |
Csa01g00289 | 588 | ProSiteProfiles | dnaJ domain profile. | 7 | 76 | IPR001623 | - | |
Csa01g00289 | 588 | SMART | c2h2final6 | 558 | 582 | IPR013087 | - | |
Csa01g00289 | 588 | SMART | c2h2final6 | 294 | 318 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00289 | Csa-Chr1:1809249 | Csa03g01925 | Csa-Chr3:15031378 | 2.46E-20 | dispersed | |
Csa01g00289 | Csa-Chr1:1809249 | Csa05g02067 | Csa-Chr5:23969057 | 1.70E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30626 | PF00226 | DnaJ | 7.30E-21 | CL0392 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00289 | K09506 | - | csv:101217729 | 1013.83 |