Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00289 ATGGCGTCCGCTAAGCGATGCCATTACGAGGTCCTCGGCCTACACATCGACTGTACCCCCGATGAAATTCGATCGGCGTACCGTAAGCTAGCTCTCCAGCGCCACCCTGATAAGCTTGTCCAGTCCGGTTTGTCACAAGCTGATGCCACCGCTCAGTTTCAAGAGCTTCAGCACGCTTACGAGGTTCTTTCCGATCCTAAAGAACGCGCCTGGTACGATTCCCATCGTTCCCAAATCCTCTTTTCTGATGCCGGATCGGTTAATTCCAGCTCTGTTGTTCCTAATCTCTTTCCGTTCTTCTCTAATACTGTTTATTCTGGCTATTCCGATTCTGGACGAGGGTTCTATAAGATCTATTCTGACCTTTTTGATAAAATTTATGGGAATGAGATTAATTTCGCTAAGAAATTAGGATTGCGTTTGGATATGGTTCGTGAAGCTCCGGTTATGGGGAATTTGGATAGTCCGTATACGCAGGTGACTGCGTTTTATAATTACTGGCTTGGGTTTTGTACGGTTATGGATTTTTGCTGGGCTGATCAGTACGATGTCATGGCCGGCCCCAACCGGAAATCGAGGAGGTTAATGGAGGAGGATAACAAGAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAATGAGACAGTGAGAGGTTTGGCTGAGTTTGTGAAGAAGAGAGATAAAAGGGTGATTGATATGGCTATGAAAAGGAACATGGAAATGGAGAAGAAGAAGGAAGAGGAGAGGGAAAGGAAAAAAAGGTTAGAGAGGGAGAAGATGGAGAAGCTTAGAACATATGAGGAACCTGATTGGGCAAAGGTTGAGGAAGTTGAGGAGGATGAAGAAGATGTGTTTGAGGAAGAGAATAGGAGAGGGAAAGAGCTGTACTGTGTTTTGTGTGGTAAGAAGTTCAAAAGTGAAAAGCAATGGAAGAATCACGAACAGTCGAAAAAGCACAAGGAGAAGGTTGCAGAGTTCAAAGAATCACTAGATGATGAGGATGAATCTGAAGAATTTGTTGATGAAGGGGAAGGTGAAGGTGAAGAAGAAACTACACGGCAGGATGATGAGGTTGATAAACTAGGGGAGGAGTTCAAGGAAAGTTTTGATATTGAGGAAGAAGAAACCGAAAGTGGTGGTGGACTTAGTGGGAGTGAATACGACGATGTTCATGAAGTTGATAGATCAGATATGGTTGGTGAGGCACTTGGATCGAATGACGACGACGAAAGAGATATTCTTGAAGCAATGGCAGCTGGACTGCGAAATAGGAAAAGTGCAGCTTCAGTGAATCAGCCTGAAGCTTCCCCAGTCAAACCTCATTTTGAAAATGAGAACGATGAGCCAAATCCAGCAGAGTTTGAAAATGGTAAGAGAGGAAAAAAGAGTCGTCGAGCCAAAAAGAAGGGCAAGGGAAACGATGAAGCTATGAATGAAACAGATTCTCGAAATTACAAAACTAACGGAGATGATTCATCACATCAGCAGGATTCCACTTCCAATTCGTTGCATAATGATGAAAATAGTGATAAGGGGGCCAGTGAGTTGGCCAAAGAACAAAGAGCTTCAAGTAAATCCGCTGATCGGAAAGCAGTTGCACAGAATGACCTGAAGATCAACTCTAGACACTCATCTAAAGGAAAGAAATCCAAGTCAACATCTAAGGATTCTGGCAATTCATGTGACACATGTGGAGAGGAATTCGACTCAAGGAATAAACTGCATAAGCATTTGGGAGCCACAGGACATGCTTCTTTAAAATATCGATGA 1767 43.75 MASAKRCHYEVLGLHIDCTPDEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDAGSVNSSSVVPNLFPFFSNTVYSGYSDSGRGFYKIYSDLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWADQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEMEKKKEEERERKKRLEREKMEKLRTYEEPDWAKVEEVEEDEEDVFEEENRRGKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEGEEETTRQDDEVDKLGEEFKESFDIEEEETESGGGLSGSEYDDVHEVDRSDMVGEALGSNDDDERDILEAMAAGLRNRKSAASVNQPEASPVKPHFENENDEPNPAEFENGKRGKKSRRAKKKGKGNDEAMNETDSRNYKTNGDDSSHQQDSTSNSLHNDENSDKGASELAKEQRASSKSADRKAVAQNDLKINSRHSSKGKKSKSTSKDSGNSCDTCGEEFDSRNKLHKHLGATGHASLKYR* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1809249 1812265 - CsaV3_1G002890.1 Csa01g00289 514786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00289 588 MobiDBLite consensus disorder prediction 306 566 - -
Csa01g00289 588 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Csa01g00289 588 SUPERFAMILY beta-beta-alpha zinc fingers 286 339 IPR036236 -
Csa01g00289 588 Gene3D DnaJ domain 1 89 IPR036869 -
Csa01g00289 588 Gene3D Classic Zinc Finger 280 345 - -
Csa01g00289 588 Coils Coil 588 588 - -
Csa01g00289 588 MobiDBLite consensus disorder prediction 439 459 - -
Csa01g00289 588 MobiDBLite consensus disorder prediction 468 489 - -
Csa01g00289 588 CDD DnaJ 7 65 IPR001623 -
Csa01g00289 588 SMART dnaj_3 6 68 IPR001623 -
Csa01g00289 588 MobiDBLite consensus disorder prediction 507 535 - -
Csa01g00289 588 Coils Coil 193 213 - -
Csa01g00289 588 ProSitePatterns Zinc finger C2H2 type domain signature. 560 582 IPR013087 -
Csa01g00289 588 MobiDBLite consensus disorder prediction 386 417 - -
Csa01g00289 588 SUPERFAMILY Chaperone J-domain 4 98 IPR036869 -
Csa01g00289 588 MobiDBLite consensus disorder prediction 490 506 - -
Csa01g00289 588 ProSitePatterns Zinc finger C2H2 type domain signature. 296 318 IPR013087 -
Csa01g00289 588 Pfam Zinc-finger double-stranded RNA-binding 294 319 IPR022755 -
Csa01g00289 588 MobiDBLite consensus disorder prediction 329 352 - -
Csa01g00289 588 Coils Coil 230 264 - -
Csa01g00289 588 SMART ZnF_U1_5 291 325 IPR003604 GO:0003676|GO:0008270
Csa01g00289 588 MobiDBLite consensus disorder prediction 306 328 - -
Csa01g00289 588 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 588 IPR044648 -
Csa01g00289 588 ProSiteProfiles Zinc finger C2H2 type domain profile. 558 587 IPR013087 -
Csa01g00289 588 Pfam DnaJ domain 8 73 IPR001623 -
Csa01g00289 588 PRINTS DnaJ domain signature 9 27 IPR001623 -
Csa01g00289 588 PRINTS DnaJ domain signature 27 42 IPR001623 -
Csa01g00289 588 PRINTS DnaJ domain signature 48 68 IPR001623 -
Csa01g00289 588 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Csa01g00289 588 SMART c2h2final6 558 582 IPR013087 -
Csa01g00289 588 SMART c2h2final6 294 318 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00289 Csa-Chr1:1809249 Csa03g01925 Csa-Chr3:15031378 2.46E-20 dispersed
Csa01g00289 Csa-Chr1:1809249 Csa05g02067 Csa-Chr5:23969057 1.70E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30626 PF00226 DnaJ 7.30E-21 CL0392 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00289 K09506 - csv:101217729 1013.83