Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00292 ATGGAAAGTTTGTTGAGTGCACGAATCAAACCATTACCTACTCATTGTAGACAAATTCATTCCTCATTTCGTCCTAAGTTGTTCTTGCAATTTGCTAGAAGATTGGATAAAGGTGGAATGGAGATGGGGAGATGTGGTATGTCATTCAATCCAATTGCCGCTTCAGTTCAGCCAATTGAAGGCCCTACACTTTCCAAATTCAACAACACATCACCATCTAAAGAGGCGTTGGAACTGTGGAGAAGTGCAAATGCAGTATGCTTTGATGTTGATAGCACAGTTTGTGTAGATGAGGGCATTGACGAATTAGCAGATTTTTGCGGAGCTGGAGAAGCGGTTGCAGAATGGACTGCTAGGGCAATGGGTGGTTCTGTTCCGTTTGAGGATGCTTTGGCGGCTAGACTTTCTTTGTTTAACCCTTCTCTTTCCCAAGTTGAGGAATTTCTTGCTAAGAAACCTCCAAGGCTTTCTCCAGGTATTGATGAGTTAGTTAAAAAGCTAAAAGCTAACAGCATTGATGTATATCTGATTTCGGGAGGCTTTCGTCAAATGATAAATCCTGTTGCATCAATTCTTGGCATTCCACATGAGAATATTTTTGCCAACCAATTGCTTTTTGGAAGCAATGGTGAATTTGTGGGGTTCGACAAAAGTGAGCCTACTTCAAGGAGTGGGGGAAAAGCAGTTGCGGTACAGCAACTGAGGAAGGCTCGTGGATACAAGACATTGGTCATGACCGGGGACGGTGCAACTGATCTTGAGGCTCGTAAACCTGGAGGTGCTGACTTGTTTATATGTTATGGTGGTGTTCAACTTCGAGAAAACGTCGCTTCAAAAGCTGACTGGCTGGTTTTCAATTTTGTAGATATGATCAGCTCCCTTGACTAA 888 43.02 MESLLSARIKPLPTHCRQIHSSFRPKLFLQFARRLDKGGMEMGRCGMSFNPIAASVQPIEGPTLSKFNNTSPSKEALELWRSANAVCFDVDSTVCVDEGIDELADFCGAGEAVAEWTARAMGGSVPFEDALAARLSLFNPSLSQVEEFLAKKPPRLSPGIDELVKKLKANSIDVYLISGGFRQMINPVASILGIPHENIFANQLLFGSNGEFVGFDKSEPTSRSGGKAVAVQQLRKARGYKTLVMTGDGATDLEARKPGGADLFICYGGVQLRENVASKADWLVFNFVDMISSLD* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1829922 1833979 + CsaV3_1G002920.1 Csa01g00292 514789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00292 295 SUPERFAMILY HAD-like 75 292 IPR036412 -
Csa01g00292 295 PANTHER BNAA06G12800D PROTEIN 1 295 - -
Csa01g00292 295 Gene3D - 71 295 IPR023214 -
Csa01g00292 295 Pfam haloacid dehalogenase-like hydrolase 84 258 - -
Csa01g00292 295 TIGRFAM serB: phosphoserine phosphatase SerB 77 280 IPR004469 GO:0006564|GO:0036424
Csa01g00292 295 Gene3D Phosphoserine phosphatase; domain 2 99 151 - -
Csa01g00292 295 PANTHER PHOSPHOSERINE PHOSPHATASE 1 295 - -
Csa01g00292 295 CDD HAD_PSP_eu 85 287 - -
Csa01g00292 295 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 85 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00292 K01079 serB, PSPH; phosphoserine phosphatase [EC:3.1.3.3] - csv:101208305 590.112
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g655 . . Bda06g00523 . . . . Bma12g00966 . . . . . Car11g00184 . . Cpe04g01462 Bhi02g00097 . . . Hepe09g0271 . . Cla06g01541 Cam06g1700 Cec06g1762 Cco06g1761 Clacu06g1667 Cmu06g1613 Cre06g2426 . . Cone13ag0037 Cone19ag0046 . . . . . Blo15g00335 . . Bpe07g00757 . . . . . Cmo11g00208 . . . . . . . . . . . . . . . . . . . . Lsi06g01414 Csa01g00292 Chy02g02443 Cme02g01831
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006561 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 7 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00292 Csa_Chr01 FPKM 11.365249 11.528257 9.036486 12.079528 14.427285 11.092514 11.668196 7.97645 6.799744 6.972157