Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00297 ATGGCGAGCGCACCAACTGCTGGCGGAATATCAAAGGTTTTGTCCAATCCATCACCGGACTCCCCCTCCGATGTCCCCGATGTTGTGGTTCAGGTCATTGATCTTAAGGCGACGGGAAATCGCTACATGTTTACTGCTAGTGACGGTGTCATGAAGCTTAAAGCTATTCTTCCATCGAATTTGACTTCTGACGTCATTTCTGGAAACATTCAAAATTTGGGGCTTATTCGCATTCTTGACTACTCTCTCAATGATATTCCAAACAAGTCAGAAAAGTATTTAATCGTGACAAAATGTGAGGTGGTTTCTCCTGCTCTAGAAAAGGAGGTAAAAACTGAGGTTAAGACAGAGGAAGCAGGTACTATTTTAAAACCGAAGGTAGAGCTTGACGATAAGAGCACATTTAACAATGGTTCTGGTATTATTCTGAAACCAAAGCAAGAATTGGTTGCTAAATCAGCTGCTCAGATTGTACACGAGCAGCGTATGAACATGGCACCAGCTGCCCGGATGTCCATGACAAGGCGAGTTCAGCCCCTTGTCTACTTAAACCCTTACCTGGGAGATTGGACCATCAAAGTTCGTGTTACTGACAAGGGAAACCTGCGTACATACAAAAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACGATGTTCAATGATGCTGCAAGGAAGTTCTATGAAAAGTTTTCCCTCGGCAAAGTCTATTATGTTTCCAGGGGAACTTTGAAAGTTGCCAATAAGAAATTCAAGACAGTTCAAAATGATTATGAAATGACTTTGAATGTGAATTCTCAAGTAGACGAGGTCAGCAATGAAGCTGCTTTTGTTCCTGAAACAAAATATAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTCGTTGATGTAATTGGAGTTGTTCAAAATGTTTCTTCTACAATGAGCATTCGAAGAAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAAACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCAACCACTGTGGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCTATAATCGCATTGAAATATCTTAGAGTTGGAGACTTTCAAGGTGTATCTTTGTCGACAATAAGCAGGAGCTCAATTACAATAAACCCAGACATAAAGGAAGCACATGATTTGAGATCATGGTATGACTCTGAAGGTAAAGCCGTATCCATGTCTTCTGTAAGCTCCGGCCTGAGCCCATCAACCAAGAGCGGTTCTAGGTCCATGTACTCTGACCGGATTTCCTTATCTCATATACTCGAAAACAAATCTTTGGGAGAAGAAAAGCCCACGTTCTTTAGCATTAGAGCATATGTCAGCTTTATCAAACCCGATCAAACAATGTGGTATCGTGCTTGCAAAACATGCAACAAGAAGGTGACTGAAGCCATCGGATCTGGATATTGGTGTGACAATTGCCAGAAAAACGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTATCTGATGCAAGTGGTGAAGCTTGGGTCTCTACATTCAACGAAGAAGCAGAGAGAATTATGGGATGCTCTGCTGATGAACTTGATCAGCTCAAATCGCAGATTGGTGAGGAGAATTCATATCAACTTAAACTCAAAGAAGCCACATGGGTTCCCCACTTGTTTCGAGTTAGCGTTTCTCAGAACGAATACAACAATGAGAAGAGACAAAGGATCACCGTCAGGTCAGTTGCTCCAGTTGATTTTGCTGCTGAGTCCAGATTTTTGCTAGAAGAGATAGCAAAAATGAAAGCTTCGTAA 1872 41.56 MASAPTAGGISKVLSNPSPDSPSDVPDVVVQVIDLKATGNRYMFTASDGVMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKSEKYLIVTKCEVVSPALEKEVKTEVKTEEAGTILKPKVELDDKSTFNNGSGIILKPKQELVAKSAAQIVHEQRMNMAPAARMSMTRRVQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKYNFVKIDMLGPHVNGRDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILENKSLGEEKPTFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEEAERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1850827 1855075 + CsaV3_1G002970.1 Csa01g00297 514794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00297 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Csa01g00297 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 7 618 - -
Csa01g00297 623 CDD RPA1_DBD_B 312 418 - -
Csa01g00297 623 MobiDBLite consensus disorder prediction 1 25 - -
Csa01g00297 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Csa01g00297 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
Csa01g00297 623 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
Csa01g00297 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Csa01g00297 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Csa01g00297 623 Gene3D - 6 113 IPR012340 -
Csa01g00297 623 Gene3D - 290 431 IPR012340 -
Csa01g00297 623 PANTHER REPLICATION FACTOR A 1, RFA1 7 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Csa01g00297 623 Coils Coil 538 558 - -
Csa01g00297 623 CDD RPA1_DBD_C 454 619 IPR013955 -
Csa01g00297 623 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Csa01g00297 623 Gene3D - 432 620 IPR012340 -
Csa01g00297 623 SUPERFAMILY Nucleic acid-binding proteins 181 286 IPR012340 -
Csa01g00297 623 CDD RPA1_DBD_A 179 282 - -
Csa01g00297 623 Gene3D - 176 285 IPR012340 -
Csa01g00297 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00297 Csa-Chr1:1850827 Csa02g00027 Csa-Chr2:279931 2.74E-102 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00297 K07466 - csv:101208545 1178.31