Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00298 ATGGCGGCAACACAGGAAGCCAGTTCTTCCCCTACTCCCAGTGCTCAAGTTGTTGGGAATGCGTTTGTCGGGCAGTACTATCACATCCTTCATCATTCTCCCCAATTGGTGCATCGGTTCTATCAGGATACAAGTTTGCTAAGCCGCCCGGATGGTAATGGAGTGATGACAACAGTGACAAGCATGCAGGCAATAAATGACAAGATCATATCCTTGAATTATGGAGATTATACAGCAGAAATAATAACTGCTGATGCCCAGGAATCTCATGAGAAAGGAGTGATTGTTTTGGTTACAGGATGCCTAACTGGGAAGGACAGTTTGAGAAGAAAATTTTCCCAAACATTTTTTCTTGCTCCTCAGGACAAAGGCTATTACGTCTTAAATGATGTGTTAAGATATGTTGAAGAGACTGAATCTATTCGGAGTAACTCTTCTTCAGGTGATGCCATCAAAGACAATACCGTAACGGTTACATCAACCCCAGAACCTGAACCATCTCATGTTCCTAACCATCTCACTGTGGAACCTCCAACGGCCCTGGAAGAGGAAGATATGAACAATGTTCCTGAAGTGTGTGATCCTTCCAGCAATGATGAAGGATCGGTGATTGAAGAGGAGGTGGTTGTTGAAGCTCCACATCCAAGCGAGCACGAAGTGGTTGTGACAGCAGTAGATGCAGCCCCTGTTGCTCAAGAAGATGCTCCAAAGAAGTCATATGCATCAATTGTTAAGGTGCCAAAGACAGTATCTGGCCCTGTGTATGTCCCAACTACTACTGTAAGAGCACCACCACCTGCAAATCCTGACCATCAGTCAACTGGCCTGGTTAAACCTGCCCCAGTTCCCGATGTCTCTGCAGCAAATGGTGACAACCTTCCTGAAAGTAGTAACCTTCATGAGGAAGCCGAAGGTCACTCCATATATGTAAGGAACTTGCCATTTGACGCCACTGTTGACCACCTTGAAGAAGAGTTTAAGAAATTTGGACCAATTAAGCGTGATGGTATCCAAGTTAGGAGTAATAAGCAAGGATTCTGTTTTGGATTTGTTGAGTTTGAGCAATTGAGCTCTGTGCATGGTGCACTTGAGGCTTCCCCATTAACAATTGGTGATTGTCAAGCTGTTGTCGAGGAGAAGAGGACTACTACTCGAGTTAGCGGAAGTGGCAGAGGGCGATTCTCTACAGGAAGAGGAGGTGGTTTCCGCAATGATAGTTTCAGGGCAAGAGGAAATTATGGTGGTGGGAGAGGAGGCTACGGTAGAAACGAATTCAGAAACCAGGGAGAGTTCTCCGGACGACCTCGGGGTTCAACTGGACGCAATGGGGAAGGAGGCTATCAGCGAGCTAACCAAAACGGAGGCGGAAGGGGAGGAGGTCGTCAGGGTGGAGCAAACCGCACTGCCGTTTCTGGCTGA 1419 46.86 MAATQEASSSPTPSAQVVGNAFVGQYYHILHHSPQLVHRFYQDTSLLSRPDGNGVMTTVTSMQAINDKIISLNYGDYTAEIITADAQESHEKGVIVLVTGCLTGKDSLRRKFSQTFFLAPQDKGYYVLNDVLRYVEETESIRSNSSSGDAIKDNTVTVTSTPEPEPSHVPNHLTVEPPTALEEEDMNNVPEVCDPSSNDEGSVIEEEVVVEAPHPSEHEVVVTAVDAAPVAQEDAPKKSYASIVKVPKTVSGPVYVPTTTVRAPPPANPDHQSTGLVKPAPVPDVSAANGDNLPESSNLHEEAEGHSIYVRNLPFDATVDHLEEEFKKFGPIKRDGIQVRSNKQGFCFGFVEFEQLSSVHGALEASPLTIGDCQAVVEEKRTTTRVSGSGRGRFSTGRGGGFRNDSFRARGNYGGGRGGYGRNEFRNQGEFSGRPRGSTGRNGEGGYQRANQNGGGRGGGRQGGANRTAVSG* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1855840 1862409 - CsaV3_1G002980.1 Csa01g00298 514795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00298 472 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 3 462 - -
Csa01g00298 472 MobiDBLite consensus disorder prediction 144 172 - -
Csa01g00298 472 Pfam Nuclear transport factor 2 (NTF2) domain 18 134 IPR002075 -
Csa01g00298 472 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 3 462 IPR039539 -
Csa01g00298 472 CDD RRM_SF 308 365 - -
Csa01g00298 472 SUPERFAMILY RNA-binding domain, RBD 292 394 IPR035979 GO:0003676
Csa01g00298 472 SMART rrm1_1 307 378 IPR000504 GO:0003723
Csa01g00298 472 Gene3D - 288 427 IPR012677 -
Csa01g00298 472 ProSiteProfiles Nuclear transport factor 2 domain profile. 18 134 IPR018222 -
Csa01g00298 472 CDD NTF2 14 136 IPR018222 -
Csa01g00298 472 Gene3D - 7 138 - -
Csa01g00298 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 365 IPR000504 GO:0003723
Csa01g00298 472 MobiDBLite consensus disorder prediction 259 302 - -
Csa01g00298 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 382 IPR000504 GO:0003723
Csa01g00298 472 MobiDBLite consensus disorder prediction 381 472 - -
Csa01g00298 472 SUPERFAMILY NTF2-like 14 135 IPR032710 -
Csa01g00298 472 MobiDBLite consensus disorder prediction 144 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00298 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 - csv:101208784 833.558
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00298 Csa-Chr1:1855840 Csa03g01165 Csa-Chr3:9101022 4.63E-51 dispersed
Csa01g00298 Csa-Chr1:1855840 Csa06g00738 Csa-Chr6:6018902 3.42E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g461 Blo04g00794 . Bda06g00520 Bda15g00626 Bpe12g00522 . . Bma12g00963 . . Cma10g00293 Cma11g00210 Car10g00279 Car11g00190 Sed08g0279 . Cpe04g01457 Bhi02g00092 Tan09g2041 Cmetu02g1274 . Hepe09g0276 . . Cla06g01536 Cam06g1695 Cec06g1757 Cco06g1756 Clacu06g1662 Cmu06g1608 Cre06g2421 . . Cone13ag0032 Cone19ag0041 . . . . . Blo15g00340 Bda11g01760 . Bpe07g00754 Bpe15g00576 Bma03g00855 Bma08g00243 . Cmo10g00315 Cmo11g00213 . . . . . Cpe18g00709 . . . . . . . . . . . . . . Lsi06g01409 Csa01g00298 Chy02g02439 Cme02g01826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003246 4 1 3 3 4 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00298 Csa_Chr01 FPKM 16.967043 16.423216 8.301407 9.761179 18.155397 17.392887 15.324 1.368634 1.359652 1.429013