Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00299 ATGTTGAGGAATAATTCAAAAGATCAAAAGGGGTGTGAAGCAAAAGAAGAAGGAGTATTAGTTAGAAGTAGTAGTAATAATAATAATGATGGAAAATACAGTTTCCCAAAGGCTCCAACAAGCAGTTCAAGACAATGGTCAGGATTCAGAAATCCAAGAATTGTTAGAGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACAATTAGAGGTTTGAGAGATAGAAGGATTAGACTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTCAAACTTGGCCAACCAAGTAAAGTCATCGATTGGCTTCTCGACGTCACCAAACTCGATATCGACAACCTCCCCCCGCTCCAAATCCCCCCTGGTTTCTCTCCCTTCCACCAACAAATGCTCTTCCCTCAATACGTCGATCCTCATCATCATTATTACACTTCTTCCTCTTCTTCTTCTTCTTCCTCTTCTTCCTCTTCTCGATTTTGTAATTCCCTACCTCCTCCGTTTATGCTCGATGTGAAGAGTACTGATGCGTATCAAACGACAATGACAGTAGAAAAAACAAAGCTTTGGGATATGGATTTAGCAGTTTTACAAGACAAAGCAGGATCAGCGACGACCGCAGCAACGACGACGAAAGGGAAGTGGATTGATGGAAGTAATAATGATAGTAATAGTACTCAACAAGTAGAAGATTACAATGAGCAAATTTCATCACAAAAGCTCTTATCAATGGCTATTTGTTCTTCAAATTTACCCAACATGATGAACAATAACAACTCCACTCCTTACAATAATTACAACTCTTCTCATGATCATAATCATCGACAACAACCTTCTTGCTTATCACTTTCACAATTTGGGAACAATAATAATAGTAATGGAGTTTTTCCATCACAATTAGTTGAGACTGCAGCTCAAGGAAGTAATTCATCATCTTCAAGTTCTTCACTATTTTTCACTCCGTATGCTTCATATATTACCAATCCATTTGAAAGCCATATCCATTTCCTGAGCTCAAATTCTCATGCTTTGTCCAACCCCTTCATGTCTTCATCTCTCCATCCTTTTGCCACCTCACAAAACTTGAAACCCTTTCCACCTCCAAGTTTCAATCTCAAGCAGCTTTTTCATGCAGCTGACACCAATAATGCCGGTGGCAGCGCCGGCGCTGGCTCTTCCGCCAAAGACGGGGCGGCCGGGAACTCGTAG 1227 40.51 MLRNNSKDQKGCEAKEEGVLVRSSSNNNNDGKYSFPKAPTSSSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLQIPPGFSPFHQQMLFPQYVDPHHHYYTSSSSSSSSSSSSSRFCNSLPPPFMLDVKSTDAYQTTMTVEKTKLWDMDLAVLQDKAGSATTAATTTKGKWIDGSNNDSNSTQQVEDYNEQISSQKLLSMAICSSNLPNMMNNNNSTPYNNYNSSHDHNHRQQPSCLSLSQFGNNNNSNGVFPSQLVETAAQGSNSSSSSSSLFFTPYASYITNPFESHIHFLSSNSHALSNPFMSSSLHPFATSQNLKPFPPPSFNLKQLFHAADTNNAGGSAGAGSSAKDGAAGNS* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1878119 1880884 + CsaV3_1G002990.1 Csa01g00299 514796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00299 408 ProSiteProfiles TCP domain profile. 63 121 IPR017887 -
Csa01g00299 408 MobiDBLite consensus disorder prediction 20 47 - -
Csa01g00299 408 MobiDBLite consensus disorder prediction 1 47 - -
Csa01g00299 408 MobiDBLite consensus disorder prediction 387 408 - -
Csa01g00299 408 PANTHER TRANSCRIPTION FACTOR TCP5 3 408 - -
Csa01g00299 408 MobiDBLite consensus disorder prediction 1 17 - -
Csa01g00299 408 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 408 IPR005333 GO:0003700
Csa01g00299 408 MobiDBLite consensus disorder prediction 262 290 - -
Csa01g00299 408 Pfam TCP family transcription factor 63 225 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00299 - - - csv:101218680 723.005
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00607 Csa01g00299 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00299 Csa-Chr1:1878119 Csa04g01035 Csa-Chr4:8128256 7.77E-41 dispersed
Csa01g00299 Csa-Chr1:1878119 Csa01g00607 Csa-Chr1:3883775 3.09E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g460 Blo04g00796 . . . Bpe12g00521 . Bma06g00019 . Cmo13g01114 . . Cma11g00212 Car10g00278 Car11g00191 Sed08g0281 Cpe20g00081 Cpe04g01456 Bhi02g00091 Tan09g2038 Cmetu07g0568 . Hepe09g0277 . . Cla06g01535 Cam06g1693 Cec06g1756 Cco06g1755 Clacu06g1661 Cmu06g1607 Cre06g2419 . . . . . Csa01g00607 Chy12g01493 Cme12g01933 . . Bda11g01762 Bda14g00885 . Bpe15g00574 Bma03g00857 Bma08g00244 Sed01g2290 Cmo10g00314 Cmo11g00214 Cma13g01069 . Car13g00905 . . Cpe18g00710 Bhi08g01077 Tan05g2351 Cmetu12g1931 Lac10g0172 Hepe07g2456 . . Cla04g01148 Cam04g1204 Cec01g1716 Cco01g1761 Clacu04g1231 Cmu04g1211 Cre01g1507 Lsi06g01407 Csa01g00299 Chy02g02437 Cme02g01824
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30627 PF03634 TCP 8.40E-23 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00299 Csa_Chr01 FPKM 4.704392 6.346323 9.596334 8.716255 8.454821 7.564083 8.078729 0.407918 0.260908 0.380711