Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00305 ATGTATGGTCAAGCAAATTATGCTTCTCAGTTTGGGCAGGGTCCTCCGAAACCGTGGCCACCTGCATACCAACAGCGTGCAGGAGCGCCTCCTCCACCTCCTCCTCCTACCTCATATGTTCAACCAGGTCCTCCAATCCCATCACATCCTATAACTCAACAAGCACCTGCCCCCCCACCTCAGGCTCAACCTCTACATTTGTCTCAGCCGGGTTCCCATGGCCCACTACCTCCCTTCTGTCAGGGCCCATCCATTCAAGTGTTACCTGGCGGGATTACGAATATCCGTCCATATTTTCACACGTTTCCACCAGTCCATGGAAACACTCAAGTTTCTGTATTTAACTCAAATGCTCAGCAGAATGTACAACTTTCACACTCGGGAGTTCAAAATATGCATCATGTTCTACCTCCGCCGCCGCCACTACCACTACCACCACCACCACCACCACCTCCACCCCCTTCTCAAGCTCCCAATCCAGATTTATTACGGCCTCCGCAGCCTTCTACTGTAGGATCTCTGCATCCTCCTTCTCAAGGACAAGCTTTATATGGGGCTCGAACTCACCAACCATTGCAGCAAGGTGGTTTGCAGGTCTTTCCCTCTATTCCACCACACCCAACAACATCCACTTTTCCTACTCCCTCATCCAATTTTCTTGGAGATTCTCATCTGCTTCCAATGGCTCCTCCTCCTCCACCACCATCCTCTCCCCCACCTATTCCACCTTCTCCCCCTCCTCCCACGTCACCCTCTCCTTCAATTCCACACCCAGATTCTTCAAACTTATTGCATGGGTCTGACTTAGGTCCTAGTTCTACCGTTCATTATAGTAAAGACTTGAAGCCCTCTGAAATTGATCAAGGAGGTACACCTCCCAGTCATTTAGGAGATAATGGACCCGGGAATGACGAACATGGAAACTTAGAAGTTGATAGTGGCCTCATGGTTTCAAATGTGGACAATGAGAAATTGGCAGATAAAGATTATGTGCAGGTTCTTCCTCCATCTCCACCTAAGCCAAAAGATGATAGAATTGTCAAGAAGATAGAAGTGTTATGTCAGCTCATTGCTGATAATGGTCCCAATTTTGAAGACACAATTCGACAAAAGGAATCTGGTAATCCAGAGTTTGAATTTTTACTTGGTGGTGAACCAGGAAGCGAATCTGCAATTGGCCACAAATATTTCCTGTGGATGAAGATGAAATATTGTTTGGCTTCCAAAAATATAGAAATAACAGAAAGATGTTCATTGAGATATTTACGAATTGAGCCACAGTCTGAGAATTTGACAGTGTTAGCAGCATCCCTTTCACCTGCAAACTCTGACATGGAGATGGAAGATGACATCACTGTAGAACAAGGAACTAGTCACTCGTTTGAAATTCAAAGCTACGAGTGCGAAGCAAGAAAAGAAGAGCATGATGCAAGGGATCTGGTACAATTACAAGAACCTGAAGTTTTGAGAAGCTGCAGCCCTGAAAAGGAGAAGGTAGCTGAAGAGGGAGGGCCAAAACATCTGCTCAACCACGAAAAATTTGGCAGCATTGCATCTTGCCAAGTTCACAGCCCTGTCAGAAGTACTGCTGGAGTTGCTGGACATCCTTCTGGAAACGATTTTGAGAATTCTCTTTCCTACTTACAAAATGACAAAGGTCAAGCTGGTGAAGTAGCATCTTCCGCAGGCACTATTTCTAGTCAGTCTACTGCACTTATTACAGGTGGCAGCCCATTTAGACTTATACAGGACTATGCATCCGATGAAAATTCTGAAAGTGATGAGGATTCACACCGTACAGATGTTCATTTTGTTGCTATTTCACCTTCCACTCCAGCTTATTCCAAGACTTCTGACAAAGACACTGGTGATCTGACTACTCTTGGGTCAAAAGGTTCTTGCCAGGTTCGTTGGAGTTATGTTCCACCTTGTGAATTCTCAATGCCCGAACCTGGTGCTCAGTTCCACTCAGAATCACCAAAACAGGTTATTGATGCTACTGAGGCAAATGTCCGAAAGACAGGGAATGAACTAAGCTACAACGACCAACATAATCAAATTGATACTGTCACAGGTACAAAGTCTTTGGATGCAATGAATGGTTGTAGTGTTGATGTTCCCCAAGATACTGGCAAGTTACAAAAGGAAACTGATGCAGAAAAGGGGAGGTTGGGACCATCTCCTGTAAAAATAGATGAATTTGGGAGATTAGTCAGAGAAGGTGGCAGTGATAGTGATTCTGACGATTCACACTATAGAAGGAGACATAGGAGTAGAAGATCTAGAAATAGTAGTGAAAGCCGTTCTCCTGTCGATAGAAGGAGGGGACGAAGAAGTCCTCGGAGAAGAAGGGAGAGGCGAAGTCGTTCTCGCAGTTGGTCTCCTCGTAACCAAAGAGACAGAAGCAGATCTCCTGTCAGCAGGCGTACAAGCCAGTTTAGTAATGAGAATAAGAGACGAGATAAGGGTATGGTACGGAAATGTTTTGACTTTCAGCGAGGTAGGTGCTATAGAGGAGCATCTTGTCGCTATGTGCACCATGAACCCAACAAGAACGATGGTTCAAGATTTCATAGGAGCAAACATCAGGATGTTCATTCAACTTCCAAGAATATAAAGATAAGAGAGGACACTATGAACATGTCTAGGGAAGTATCAGATCTTGGGCATACTAAAGTCGAGATTCAGGAGAGCATCCTGCATAATGTATCCCCAAAAGAGGATACTCATGACTGGAAGACAGATAATCCTACGGGTGATCCAGATTCATTTGTATCTAAATGTCGAAGTTCTAGCGAAAGAACTGGCTTAGTTCAGGATGCATTAATTTGTTTGGAACCAGCTGAGGCTGTCCACGTTCGTGCTAACGATGATGGTCAAGAACCAAAGAAGTCTTATGAGCAACCTTCAGTTACGGCCTCCTCACAATGCATGAGCAATGCTGATACTGAGAAATTATCTGGTGATATTTCCATGAGCGTGCTAACTTCTGTAGAGAATTCTGTGGCTCAGCAATCCAACACCTTTGTTGCAGAGCTTCAATCTTCCACTGACCTTTCGCACCAGATGGATGGTTCTTTTGTCTCCAATTTATTACCGGATCAAGTAACTGCAGTTACCTCCAATAAAGCTCCTGAATGGGAACATTTTCCAGATAGAACTTCATCCATTAAGCCACAGTTTGATACCAGTTCTGCTATTCAGCTACCTTTGACCTCACAAATTTTATCAGAGTCTCCAGTACCAAAACCACTATCTGCTACTGCTCCAGTTAGTGCTACTGATGATGACCATTCTCTTACAGAGCTGCCTCCTCCGCCACCTCTCATAATTTCACATGTCAGTAGTGCTGAGATTTCAATGCCTGCTCCCTATAATTTTGTGTCACAAAATTTGTCCTTTCCTTCTAACTCTTCACTACCAATAGGTTTTCATCCTCACCACGGTATGGTGTCCATTCAGCCATCTCACTTTCAAAGTACTTCTTTACTGCCTCCGAAACCGTTGTATAATTCATTAGCTCCTGTAGCTACCAATGCTGGTATGCCAATGCAATTCCATCATAGTCATTTGTCTCAAGGACGTGACCTGGGTTCTCAGTCTGCTATGAGTTCCCAGCCATTGGAGCTGCATTCTCATTCTAAGCTTGGTGAGTCCCCATTGCAAGAGCCTTATAGAGCTCCTCCAATGCACATGGATGAGATTAGATCAATTGCCCCAGTTGCAAACAATCGACCTACTCAACCTTTTGGATTCCCAAGCTTTCAGAATGAAGAAAATCTTGGACGGACTTCTGTAGAGATGAATTCTTCCAGTTTTTTTCCTCAACGAAACTTTAGCGATCAATCTATGCTTGCTACAAATGCAAATAGAATGCAACCTTCTGGGGACAATTTTCCTCCTAGTGAATTTCGAAGTTCATTTTCACAGTTTCAACCTTATTCACGGTTTCAACAGCCATTGTATACCTCACAACCTGCACACGATACCTTGTTCCATGACCCAAGCCAGATTGGTAGTATCTCTCGGCATTATCCCGATCCTCTAAGCAGGAGCCATCCGTCTTTGCTTCCTGAATTTGGGGGTTTGGGAATTACCACACATCATAATCCTTATGCGTCTACTTTTGAGAAGCCACTTAGCTCTAGTTTCAGATCTAACTTTTTGAACTTTGGGAATGATGCACCTAGTGGTGATATACGTGGTTCTACTTTCAATTTGAACAGTGTTCACGTCGATGGGCAAGGTACTAATTATGTTGGATCTAGGCAGACAGTTGCTTCTCCAAATTCCACAAAACCTTTGGGGAAACTCTTGTCTGGTACAGACGATGATCAATATGACCCACTCTTTGACAGCATTGAGCCATCATCACCTATAACCAAGAAATCCGATCGTGGTCAAAAGCTGAAAAAAGCAAGGGAATCTCATATGATAGCAAGACTTGGTGGTTCCCATAAACTGCTAGATGTGGAGGAGAACAACAAGCATAAGGAAGTCGCTGCTGTGACTTCAACTACTTCTTTGGAGAATGATGAATTTGGAGAGACAGGAGATGCAGAAGCTGGTGCTGTTGAGAATGACCTTGACGATGATGCAAACTTATCCGGAGAAATTGAAATCGATCAGGTCAAGTCCTCTGAGAAGAGCAAGAAATCCAAAGGTTCCAGGTCTCTGAAGCTTTTTAGGATTGCTATTGCTGATTTTGTCAAGGAAGTTTTAAAACCATCATGGCGACAAGGCAACATGAGCAAGGAAGCTTTTAAGACAATTGTCAAGAAGACTGTCGATAAGGTATCTGGAGCTATGAAGAGTCACCAAATACCCAAGTCTCAAGCAAAGATAAATCGATACATTGATTCATCACAACGAAAACTGACAAAGCTTGTCATGGGTTATGTCGACAAGTACGTTAAGACATAG 4923 43.84 MYGQANYASQFGQGPPKPWPPAYQQRAGAPPPPPPPTSYVQPGPPIPSHPITQQAPAPPPQAQPLHLSQPGSHGPLPPFCQGPSIQVLPGGITNIRPYFHTFPPVHGNTQVSVFNSNAQQNVQLSHSGVQNMHHVLPPPPPLPLPPPPPPPPPPSQAPNPDLLRPPQPSTVGSLHPPSQGQALYGARTHQPLQQGGLQVFPSIPPHPTTSTFPTPSSNFLGDSHLLPMAPPPPPPSSPPPIPPSPPPPTSPSPSIPHPDSSNLLHGSDLGPSSTVHYSKDLKPSEIDQGGTPPSHLGDNGPGNDEHGNLEVDSGLMVSNVDNEKLADKDYVQVLPPSPPKPKDDRIVKKIEVLCQLIADNGPNFEDTIRQKESGNPEFEFLLGGEPGSESAIGHKYFLWMKMKYCLASKNIEITERCSLRYLRIEPQSENLTVLAASLSPANSDMEMEDDITVEQGTSHSFEIQSYECEARKEEHDARDLVQLQEPEVLRSCSPEKEKVAEEGGPKHLLNHEKFGSIASCQVHSPVRSTAGVAGHPSGNDFENSLSYLQNDKGQAGEVASSAGTISSQSTALITGGSPFRLIQDYASDENSESDEDSHRTDVHFVAISPSTPAYSKTSDKDTGDLTTLGSKGSCQVRWSYVPPCEFSMPEPGAQFHSESPKQVIDATEANVRKTGNELSYNDQHNQIDTVTGTKSLDAMNGCSVDVPQDTGKLQKETDAEKGRLGPSPVKIDEFGRLVREGGSDSDSDDSHYRRRHRSRRSRNSSESRSPVDRRRGRRSPRRRRERRSRSRSWSPRNQRDRSRSPVSRRTSQFSNENKRRDKGMVRKCFDFQRGRCYRGASCRYVHHEPNKNDGSRFHRSKHQDVHSTSKNIKIREDTMNMSREVSDLGHTKVEIQESILHNVSPKEDTHDWKTDNPTGDPDSFVSKCRSSSERTGLVQDALICLEPAEAVHVRANDDGQEPKKSYEQPSVTASSQCMSNADTEKLSGDISMSVLTSVENSVAQQSNTFVAELQSSTDLSHQMDGSFVSNLLPDQVTAVTSNKAPEWEHFPDRTSSIKPQFDTSSAIQLPLTSQILSESPVPKPLSATAPVSATDDDHSLTELPPPPPLIISHVSSAEISMPAPYNFVSQNLSFPSNSSLPIGFHPHHGMVSIQPSHFQSTSLLPPKPLYNSLAPVATNAGMPMQFHHSHLSQGRDLGSQSAMSSQPLELHSHSKLGESPLQEPYRAPPMHMDEIRSIAPVANNRPTQPFGFPSFQNEENLGRTSVEMNSSSFFPQRNFSDQSMLATNANRMQPSGDNFPPSEFRSSFSQFQPYSRFQQPLYTSQPAHDTLFHDPSQIGSISRHYPDPLSRSHPSLLPEFGGLGITTHHNPYASTFEKPLSSSFRSNFLNFGNDAPSGDIRGSTFNLNSVHVDGQGTNYVGSRQTVASPNSTKPLGKLLSGTDDDQYDPLFDSIEPSSPITKKSDRGQKLKKARESHMIARLGGSHKLLDVEENNKHKEVAAVTSTTSLENDEFGETGDAEAGAVENDLDDDANLSGEIEIDQVKSSEKSKKSKGSRSLKLFRIAIADFVKEVLKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINRYIDSSQRKLTKLVMGYVDKYVKT* 1641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1901105 1907969 - CsaV3_1G003050.1 Csa01g00305 514802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00305 1640 Coils Coil 463 483 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 196 310 - -
Csa01g00305 1640 SMART surpneu2 347 406 IPR000061 GO:0003723|GO:0006396
Csa01g00305 1640 MobiDBLite consensus disorder prediction 226 255 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 256 279 - -
Csa01g00305 1640 PANTHER EXPRESSED PROTEIN 1 1640 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 1192 1212 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 1421 1474 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 134 165 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 711 753 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 1188 1227 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 14 65 - -
Csa01g00305 1640 ProSiteProfiles SURP motif repeat profile. 349 397 IPR000061 GO:0003723|GO:0006396
Csa01g00305 1640 MobiDBLite consensus disorder prediction 903 928 - -
Csa01g00305 1640 Gene3D Surp module 335 409 IPR035967 GO:0003723|GO:0006396
Csa01g00305 1640 MobiDBLite consensus disorder prediction 130 182 - -
Csa01g00305 1640 ProSiteProfiles Zinc finger C3H1-type profile. 827 849 IPR000571 GO:0046872
Csa01g00305 1640 Pfam Surp module 350 399 IPR000061 GO:0003723|GO:0006396
Csa01g00305 1640 MobiDBLite consensus disorder prediction 1 83 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 903 917 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 774 790 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 1421 1437 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 700 819 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 954 979 - -
Csa01g00305 1640 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1640 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 791 806 - -
Csa01g00305 1640 MobiDBLite consensus disorder prediction 1078 1105 - -
Csa01g00305 1640 SUPERFAMILY Surp module (SWAP domain) 319 404 IPR035967 GO:0003723|GO:0006396
Csa01g00305 1640 MobiDBLite consensus disorder prediction 965 979 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00305 - - - csv:101219633 3019.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00305 Csa-Chr1:1901105 Csa06g02788 Csa-Chr6:24312876 5.05E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00305 Csa_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0