Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00306 ATGAGGTGGGAAAGGGTTGAGTTACTTTCAAGACAGGGCCAAGGTGGAGCTCTGGGGGAGATTCCAGGGCCCGGTAAAAGATGGGGACATACTTGTAACGCCATTAAAGATGGAAGATATCTCTATGTTTTTGGGGGCTATGGTAAAGACAACTGCCAGACTAACCAAGTGCACGTCTTCGATACTGCAAAACAAACATGGAGTCAGCCTGTGATAAAAGGAAGTCCACCTACTCCAAGGGACAGTCACACCTGTACTACAATTGGTGACAACCTTTTTGTATTCGGGGGTACTGATGGAATGAGCCCTCTTAAGGATTTGTATATACTGGACACCTCTATGCATACTTGGATTTGTCCAAGTTTAAGAGGCAACGGGCCAGAGGCACGAGAGGGTCATAGTGCGACCCTTGTTGGCAAACGACTCTTCATCTTTGGTGGTTGTGGCAAATCTACCAGCAATAATGATGAAGTGTACTATAATGATCTCTACATATTGAATACAGAGACATTTGTATGGAAACAAGCTACAACAATGGGTACTCCGCCATCTCCACGTGATAGCCATACTTGCTCATCCTGGAAGAATAAGGTTATAGTCATTGGTGGTGAAGATGCGCATGACTATTATTTATCAGATGTTCACATCCTTGACACAGATACTCTCGTGTGGACAGAGTTAAACACTTCAGGTCAATTGTTACCACCTCGTGCTGGTCATACAACTATAGCTTTTGGAAGGAGCTTGTTTGTTTTTGGGGGATTTACTGATGCCCAAAATCTATACAATGACCTTCATATGCTCGATATTGAAAATGGTGTATGGACCAAGATCACCACTATGGGCGATGGACCTTCTGCTAGATTTTCAGTGGCTGGGGACTGTTTAGATCCCTACAAAGTTGGCACACTTGCTCTTTTAGGCGGTTGCAATAAGGGTCTTGAAGCTCTTGGCGACATGTATTACTTGTTCACAGGACTTGCGAAGGAGACTGAGAGGAAACCAGAGAAGTTATCTTTGAGAAAGCAATTGAAGCTGAAGTGTCAAGAACAGAACCTAAATGCTATTCATGGAAGAGCTATGGTACCAATTGGAGTCAATGCCGATTTGTTCCAACCAATCACTGTGCAAGGCTATGGGACTCCATACAAACACAATTTTCCTTTGAATCAATCTCAGCATCTTCAAGGAAAGAAAAGTTTTCAAGCCAAGGTTACAGAAAGCATAGCAAATGGATACACAATTGAAACTGTTATTGATGGGAAACCTTTGCGGGGAGTTATATTTTCCAACAGACCAAACCCTACTCACTTTGCTCATCATAGTACTGTTAGGAAGAGAACTTTTGGAGATATTGACCCAATATCCAATGGTGATATCAACATCAAGTCGAAGATTCCTAGACGGACCAAGCAAGATGAAGTAGATAATAAACAAGAGCATGGTAGCAGTATAAATGCTCCTACTATGCATGAACCAGAAATGGTTGTCGCTTCGGCGACACCCATAAAAGATCCAGTATCTTCGGATGCTTCGCTACCATCGAAGGTGAGTTCAAGTTCAGAATTGCCTCCTAGTCTAAAAGATGTTTCAACATCGGCGCAAGCTCCAATGGATATTGGCGTTGAAAATTCTGGAGTTGCAAAGACGAACGATGCCTTGGATTCTACGGCAGACATTCAAAATGAAAGTATTCCGACCCCAGCTTCAATCAAGGAAACTATTGCCTTTTTTCCCGACCAAGATGTCAAAAGACCTACGACAATTGAGGAGGTGACTCAAGTATCAAAATAG 1794 42.81 MRWERVELLSRQGQGGALGEIPGPGKRWGHTCNAIKDGRYLYVFGGYGKDNCQTNQVHVFDTAKQTWSQPVIKGSPPTPRDSHTCTTIGDNLFVFGGTDGMSPLKDLYILDTSMHTWICPSLRGNGPEAREGHSATLVGKRLFIFGGCGKSTSNNDEVYYNDLYILNTETFVWKQATTMGTPPSPRDSHTCSSWKNKVIVIGGEDAHDYYLSDVHILDTDTLVWTELNTSGQLLPPRAGHTTIAFGRSLFVFGGFTDAQNLYNDLHMLDIENGVWTKITTMGDGPSARFSVAGDCLDPYKVGTLALLGGCNKGLEALGDMYYLFTGLAKETERKPEKLSLRKQLKLKCQEQNLNAIHGRAMVPIGVNADLFQPITVQGYGTPYKHNFPLNQSQHLQGKKSFQAKVTESIANGYTIETVIDGKPLRGVIFSNRPNPTHFAHHSTVRKRTFGDIDPISNGDINIKSKIPRRTKQDEVDNKQEHGSSINAPTMHEPEMVVASATPIKDPVSSDASLPSKVSSSSELPPSLKDVSTSAQAPMDIGVENSGVAKTNDALDSTADIQNESIPTPASIKETIAFFPDQDVKRPTTIEEVTQVSK* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1910158 1919265 - CsaV3_1G003060.1 Csa01g00306 514803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00306 597 SUPERFAMILY Galactose oxidase, central domain 212 311 IPR011043 -
Csa01g00306 597 Pfam Galactose oxidase, central domain 236 285 - -
Csa01g00306 597 PANTHER KELCH REPEAT DOMAIN 1 482 - -
Csa01g00306 597 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 482 - -
Csa01g00306 597 Pfam Kelch motif 127 171 - -
Csa01g00306 597 SUPERFAMILY Galactose oxidase, central domain 21 245 IPR011043 -
Csa01g00306 597 MobiDBLite consensus disorder prediction 449 492 - -
Csa01g00306 597 MobiDBLite consensus disorder prediction 504 547 - -
Csa01g00306 597 Gene3D - 180 333 IPR015915 GO:0005515
Csa01g00306 597 Gene3D - 2 179 IPR015915 GO:0005515
Csa01g00306 597 MobiDBLite consensus disorder prediction 505 539 - -
Csa01g00306 597 MobiDBLite consensus disorder prediction 464 480 - -
Csa01g00306 597 Pfam Galactose oxidase, central domain 38 88 - -
Csa01g00306 597 Pfam Kelch motif 185 230 IPR011498 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00306 - - - csv:101209027 1209.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00306 Csa-Chr1:1910158 Csa02g00508 Csa-Chr2:3579729 1.43E-15 dispersed
Csa03g02760 Csa-Chr3:26463349 Csa01g00306 Csa-Chr1:1910158 7.63E-07 dispersed
Csa01g00306 Csa-Chr1:1910158 Csa02g01678 Csa-Chr2:16012904 1.83E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008147 2 4 2 2 2 0 2 0 0 1 0 0 2 1 1 2 0 1 1 0 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00306 Csa_Chr01 FPKM 1.700528 1.811781 2.562763 2.25769 1.42537 0.718453 0.460464 16.070904 15.882928 14.783652