Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00309 ATGGCTTCTCTTCCTTCCCCACACACCATGAATCTCCTCAACAAATCCCTCTCTCTTTCCCCACCTCAATCCTTCATTGCCTTAATACCTTCTTCTTCTTCTTCTTCTTCCTCCAAACCCCTTCGTTCCCCTACTATTCGCTGTTCTGTTGCTGTGGCTCCTTCTGTTTCAACCAACGTGTCCAAGGAATTCAAGTTGAAGTCCCTCAAGGCCCGTCAGATCATTGACAGTAGAGGCAATCCTACGGTCGAGGTTGATTTGATTACTGACGATCTCTACCGATCCGCTGTTCCTAGTGGGGCTTCTACTGGGATCTATGAGGCGTTGGAGCTTAGAGATGGGGACAAAACTGTTTATGGAGGTAAAGGTGTGCTTACTGCTGTTAAGAATATCAATGATATCTTGGCTCCTAAGCTCGTTGGCGTCGATGTCAGGAATCAAGAAGAAGTTGATGCAATCATGCTGGAAATTGATGGAACTCCAAACAAGTCGGAACTTGGGGCAAATGCTATACTAGGAGTTTCTTTGAGTGTCTGCAGAGCTGGTGCTGGCGCTAAGGGACTACCATTGTATAGACACATCCAAGAATTATCAGGCACCAAGGAACTTGTTATGCCAGTTCCTGCTTTTAATGTTATAAACGGGGGTAGCCATGCTGGAAATAATCTAGCAATGCAAGAATTTATGATCTTACCTGTAGGTGCTTCATCTTTCGCAGAGGCACTTCGGATGGGAAGTGAAGTTTATCACACACTAAAGGGAATTATTAAAGCAAAATATGGACAAGATGCCTGCAATGTTGGAGATGAGGGTGGATTCGCTCCAAATGTTCAAGATAACAGAGAAGGACTGGTGTTGCTTATTGATGCCATTGAAAAGGCTGGCTATACAGGAAAGATCAAAATAGGAATGGATGTTGCAGCTTCCGAGTTTTTCACTGCAGAGGGAAAATATGATTTGAACTTCAAGAAACAGCCAAATGATGGAGCTCATGTCCACTCAGCTCATGGCCTTGGCGAACTCTATAAACAGTTTGTCAAAGATTTTCCCATTGTTTCCATCGAGGACCCCTTTGATCAAGATGATTGGAGTTCCTGGGCTTCTCTACAATCTTCCGTTGATATCCAACTTGTGGGAGATGATTTGCTGGTAACAAATCCAAAGAGAATTGCCGAAGGCATTCAGAAAAAAGCTTGTAATGCTTTACTTCTGAAGGTTAACCAAATTGGATCAGTGACTGAATCAATTCAAGCTGCTCTTGATTCCAAGGCTGCTGGCTGGGGAGTGATGGTCAGCCACCGAAGTGGTGAAACTGAAGATAATTTTATTGCGGATCTTTCAGTTGGCTTGGCTAGTGGACAGATCAAAACTGGAGCTCCATGCCGAAGCGAACGGTTAGCCAAATATAATCAGCTTCTTCGCATTGAAGAAGAACTCGGCAGTGTTCGATATGCCGGTGCGTCTTTCAGATCACCTTAG 1479 44.29 MASLPSPHTMNLLNKSLSLSPPQSFIALIPSSSSSSSSKPLRSPTIRCSVAVAPSVSTNVSKEFKLKSLKARQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIYEALELRDGDKTVYGGKGVLTAVKNINDILAPKLVGVDVRNQEEVDAIMLEIDGTPNKSELGANAILGVSLSVCRAGAGAKGLPLYRHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGASSFAEALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYTGKIKIGMDVAASEFFTAEGKYDLNFKKQPNDGAHVHSAHGLGELYKQFVKDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEGIQKKACNALLLKVNQIGSVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGSVRYAGASFRSP* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1932281 1935918 + CsaV3_1G003090.1 Csa01g00309 514806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00309 492 Pfam Enolase, C-terminal TIM barrel domain 203 490 IPR020810 -
Csa01g00309 492 ProSitePatterns Enolase signature. 402 415 IPR020809 -
Csa01g00309 492 PANTHER ENOLASE 1, CHLOROPLASTIC 30 492 - -
Csa01g00309 492 SUPERFAMILY Enolase N-terminal domain-like 66 197 IPR029017 -
Csa01g00309 492 PRINTS Enolase signature 97 111 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 PRINTS Enolase signature 167 183 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 PRINTS Enolase signature 224 237 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 PRINTS Enolase signature 379 390 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 PRINTS Enolase signature 402 416 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 PRINTS Enolase signature 431 448 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 Gene3D - 60 187 IPR029017 -
Csa01g00309 492 SMART Enolase_C_3 202 492 IPR020810 -
Csa01g00309 492 Pfam Enolase, N-terminal domain 67 194 IPR020811 -
Csa01g00309 492 PANTHER ENOLASE 30 492 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 Hamap Enolase [eno]. 64 479 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 Gene3D - 188 492 IPR036849 -
Csa01g00309 492 CDD enolase 68 478 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 TIGRFAM eno: phosphopyruvate hydratase 67 488 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 SMART Enolase_N_3 66 194 IPR020811 -
Csa01g00309 492 SFLD enolase 67 479 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Csa01g00309 492 SFLD enolase 67 479 - -
Csa01g00309 492 SUPERFAMILY Enolase C-terminal domain-like 202 485 IPR036849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00309 K01689 ENO, eno; enolase [EC:4.2.1.11] - csv:101209516 950.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00309 Csa-Chr1:1932281 Csa06g02653 Csa-Chr6:23354450 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g393 . . . . . . . . . . . . . Car11g00221 Sed12g2041 . Cpe04g01430 Bhi02g00032 Tan09g1975 Cmetu02g0279 . Hepe09g0308 . . Cla06g01505 Cam06g1660 Cec06g1722 Cco06g1717 Clacu06g1626 Cmu06g1575 Cre06g2385 . . Cone13ag0013 Cone19ag0011 . . . . . . . Bda14g00902 . Bpe15g00556 Bma03g00876 . . . Cmo11g00246 . . . . . . . . . . . . . . . . . . . . Lsi06g01369 Csa01g00309 Chy02g02429 Cme02g01786
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011033 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00309 Csa_Chr01 FPKM 116.498306 116.239326 100.015541 95.311035 50.264835 52.239426 45.880745 191.51947 199.145432 186.804047