Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00312 ATGTTCTCAAAAACCCAAAAAGCGACGGATAAGATGAGATTATTTTTGCAAAACAAGGTGGATTGCTCAGTGTTTCTTCGGTTCTTGAGCATGAGCCACAAGAAGAGCTCCAAAATTCAGGCTATCTACGACCTTTGTAAAAAGAGTTTAACTCCCGCGAACTCTCCACTTTCTTCTCAAACTATCAAGAATCTATGTTCCCTTTTGGATACGGTTGGCGTGGGGGATGTTGGGCTTAAAGAAGAGAATGCTGATGACGACCGAGGGCATGGACTTTTTGGACTGAGCCAATTGAATAGGATAGCTCGATGGGCTCAGCCAATAACATACGTTGACATATTTGAATGTGAAAATTTTACGATATGTATATTTTGCTTTCCAACTTCTTCAGTCATCCCACTTCACGACCATCCTGGGATGACTGTGTTCAGCAAAGTTCTCTATGGTTCTCTTCATGTCAAAGCATATGACTGGGTGGAACCTCCCTTCATTCACGAAAGCAAGGGATCCACGTATTTTTCAGCAAGGTTGGCTAAGTTAGCCGTTGATAAAGTTCTAACGGCATCAAGTGCAACGTCAGTTTTGTACCCGAAGGCTGGAGGTAATCTACACTGTTTCACTGCGATTTCGCCTTGTGCTGTGCTTGATATTCTTTCGCCTCCTTATAACGAGGATAAAGGAAGACGATCTGCAGATACCAAACTCTATCTAAATGATGAAGAAGTGGAAGATCATGCCTGGCTTGCAAAAATTGAGACCCCCGATGATCTATATATGCGACCTGGAATGTATGTTGGTCCTGCTATTCAAACTTAG 816 42.65 MFSKTQKATDKMRLFLQNKVDCSVFLRFLSMSHKKSSKIQAIYDLCKKSLTPANSPLSSQTIKNLCSLLDTVGVGDVGLKEENADDDRGHGLFGLSQLNRIARWAQPITYVDIFECENFTICIFCFPTSSVIPLHDHPGMTVFSKVLYGSLHVKAYDWVEPPFIHESKGSTYFSARLAKLAVDKVLTASSATSVLYPKAGGNLHCFTAISPCAVLDILSPPYNEDKGRRSADTKLYLNDEEVEDHAWLAKIETPDDLYMRPGMYVGPAIQT* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1942969 1946162 - CsaV3_1G003120.1 Csa01g00312 514809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00312 271 SUPERFAMILY RmlC-like cupins 36 227 IPR011051 -
Csa01g00312 271 Pfam PCO_ADO 68 269 IPR012864 GO:0016702
Csa01g00312 271 PANTHER 2-AMINOETHANETHIOL DIOXYGENASE 31 270 - -
Csa01g00312 271 PANTHER UNCHARACTERIZED 31 270 IPR012864 GO:0016702
Csa01g00312 271 CDD cupin_ADO 117 223 - -
Csa01g00312 271 Gene3D Jelly Rolls 95 244 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00312 K23953 PCO; plant cysteine oxidase [EC:1.13.11.-] - csv:101209759 542.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00312 Csa-Chr1:1942969 Csa06g01334 Csa-Chr6:11151899 2.76E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g394 . Blo16g00149 . . . Bpe13g00331 Bma06g00010 . . . Cma10g00265 . Car10g00249 . Sed08g0320 . . Bhi02g00034 Tan09g1976 Cmetu02g1790 . . . . Cla06g01506 Cam06g1661 Cec06g1723 Cco06g1718 Clacu06g1627 Cmu06g1576 Cre06g2386 . . Cone13ag0014 Cone19ag0012 . . . . . . . . . . . . . Cmo10g00282 . . . . . . Cpe18g00732 . . . . . . . . . . . . . . Lsi06g01370 Csa01g00312 Chy02g02428 Cme02g01787
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005781 2 4 2 3 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00312 Csa_Chr01 FPKM 18.219349 20.916748 26.579681 24.906067 15.060252 14.936546 15.073463 29.59886 30.784269 28.981447