Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00315 ATGCCGACCGTTAGCGTCGGAAGAGATCTTCTGTTTGCTGCCATTGGAAGAACTTACACGCAGGAAGAGTTTGAAGAGCTGTGCTTTAGGTTTGGAATTGAGCTTGATGACGTTACGACGGAGAAGGCGATTATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCAAATAGATACGATTTGCTATGTCTGGAAGGGCTGGCACAAGCACTGCGCATTTTTAATAAGCAGGAGGACACACCCAGATATACATTAGCCAATATCAGCAAAGAATCTATGCATAAAATGCATGTAAAACCGGAGACTTCCATGATCCGTCCTTTCATCGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATGACAGTTTTATTGATTTGCAAGAGAAACTTCATCAGAACATATGTCGACGGAGAAGTCTCGTTGCCATTGGAACTCATGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCGCCCACAGCTATAAACTTTGTGCCACTGAAACAGACAAAAAATTTCAGAGCCGATGAGCTAATGGAGTTCTATAAATCAGATTTGAAGCTGAGGAAGTACGTGCCCATAATAGAAAAGTCACCTGTATATCCCATTTTGTATGACCGCAACAGAACTGTTTTGTCTTTGCCCCCCATTATCAATAGTGCACATTCAGCTATTACTTTGAAGACAAAGAACGTGTTTATTGAATGCACAGCGACTGATCTGACAAAGGCCAATATCGTCTTGAATACTATGGTAACTATGTTTTCAACGTTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATCCGGATGGCAGGTCGTGTATTTATCCAGAAATATCCCTCTACAATATGGAAGTTTCTCTGTCTTATATCAATAAATGTATTGGCGTCTCATTGGAGACAGAAGAGGTTATCAGTTTGTTAAATAGGATGCAATTGCACGCTGAACAGTCGGTATCCGGTGACAAATCTAGTATAACTATATCTGTGCCTCCAACAAGGAGTGATGTGCTACACCCATGTGATGTCATGGAGGATGTTGCTATTGCTTACGGGTATAATAACATCCCGAAGAGTAAACCAGCATCTTTGCAGCCTCTAACATTAAATGAGTTCAGTGACCTTATTAGAGGAGAGATTGCAATGAGTGGGTTCACAGAGGTACTTACGTGGATTCTATGCTCTTATAAAGAGAACTTTGCCATGTTAAAGCGTGAAGATGATAAATCTACTGCAGTTGTCATTGGAAATCCCCGTTCAACTGATTTTGAGGTTGTCCGAACCAGTCTTATGCCTGGTCTTTTGAAAATTGTTGGACATAATAAGGATCATCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTGCTGGATGATTCAAAAGATGTTGGCGCTAGAAATCATCGTCATCTTGCTGCTCTATATTGCGGTGCCAATTCTGGATTCGAATTGATTCATGGTTTGGTCGACCGAATTATGGAAGTCGTGGGAGTTCCTTTTGTCTCAGTTGGCGATGATACTGGGTATTACATAAAATGTTCAGACAACCCGGAGTTTCTTACTGGCAGACAAGCTCACATCATTTATAAAGGAAAGAAAATTGGCACTTTCGGCATTGTTCATCCCGAGGTTTTGGAGAACTTTGACATTCCCGATCCATGTTCCTTAGTTGAAGTTAACATGGAGAGCTTTTTATAG 1776 40.77 MPTVSVGRDLLFAAIGRTYTQEEFEELCFRFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEDTPRYTLANISKESMHKMHVKPETSMIRPFIVCAVLRDMTFDEAIYDSFIDLQEKLHQNICRRRSLVAIGTHDLDTLEGPFTYEALPPTAINFVPLKQTKNFRADELMEFYKSDLKLRKYVPIIEKSPVYPILYDRNRTVLSLPPIINSAHSAITLKTKNVFIECTATDLTKANIVLNTMVTMFSTLCKKKFEIEPVEVIYPDGRSCIYPEISLYNMEVSLSYINKCIGVSLETEEVISLLNRMQLHAEQSVSGDKSSITISVPPTRSDVLHPCDVMEDVAIAYGYNNIPKSKPASLQPLTLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFAMLKREDDKSTAVVIGNPRSTDFEVVRTSLMPGLLKIVGHNKDHPKPIKIFEVGDVSLLDDSKDVGARNHRHLAALYCGANSGFELIHGLVDRIMEVVGVPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1952410 1960679 - CsaV3_1G003150.1 Csa01g00315 514812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00315 591 SUPERFAMILY Putative DNA-binding domain 307 381 IPR009061 -
Csa01g00315 591 SUPERFAMILY Class II aaRS and biotin synthetases 374 590 IPR045864 -
Csa01g00315 591 CDD PheRS_beta_core 393 590 IPR041616 -
Csa01g00315 591 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 89 IPR040659 -
Csa01g00315 591 SUPERFAMILY Putative DNA-binding domain 5 91 IPR009061 -
Csa01g00315 591 Gene3D Bira Bifunctional Protein; Domain 2 391 591 IPR045864 -
Csa01g00315 591 Pfam B3/4 domain 123 280 IPR005146 GO:0003723|GO:0004826
Csa01g00315 591 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 380 587 IPR041616 -
Csa01g00315 591 Gene3D - 1 89 - -
Csa01g00315 591 Gene3D - 99 304 IPR020825 -
Csa01g00315 591 SMART B3_4_2 118 280 IPR005146 GO:0003723|GO:0004826
Csa01g00315 591 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 591 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Csa01g00315 591 Pfam tRNA synthetase B5 domain 308 377 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Csa01g00315 591 SMART B5_2 305 377 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Csa01g00315 591 ProSiteProfiles B5 domain profile. 303 382 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Csa01g00315 591 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 591 IPR045060 GO:0004826|GO:0006432
Csa01g00315 591 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 591 - -
Csa01g00315 591 Gene3D - 306 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00315 K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] - csv:101210257 1166.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00315 Csa_Chr01 FPKM 5.876016 5.176531 32.507202 30.412022 42.914135 36.094082 47.498714 3.319625 3.19731 3.136564