Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00316 ATGGCTCAAGATACGTCTCCTAGCATCGAATCACCTCGGAAGCGTTCTGGCCTTTTGCGAGATCAAGTTCAGTTAGTTAAGAAGAAGGACTCGAATCGATATGAGATCCTTCCAATTCAGGATCCTCTTTCATTTGAGAAAGGATTTTTCATTGTAATACGTGCGTGCCAGTTGCTGTCTCAAAAGAACGATGGGATAATTCTAGTAGGAGTGGCAGGGCCCTCTGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATTCCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATCGATGGCAATTTTGATGACCCACGTCTAACGGATTATGATACATTGCTGGAAAATATTAATGGTTTAAGAGAAGGAAAATCTGTCCAAGTTCCCATTTATGACTTCAAGACAAGTAGTCGCGTGGGCTACAGGATTGTTGAAGTTCCCGAGTCACGAATTGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAAATTACGTCCGTTGCTAGATCTTCGTGTATCAGTCACTGGTGGTGTTCATTTTGACTTAGTGAAAAGGGTACTACGAGATATTCAACGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTTTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACCGCCCATATAAGAATTATTAACAAATTCAATCCCTTTACTGGTTTCCAGAATCCTACTTACATTCTTAAGTCAACGAAAGCAGTAGCCGTGGATCAAATTAAGGCTGTTATATCTGAAAATCACAATGAGTCTACTGAGGAAACTTATGACATTTACCTTCTACCTCCTGGTGAAGATCCTGAAGTGTGTCAATCCTATCTGAGGATGAGGAATAGGGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTTACAGATGTTCCATTCATAATTTCACCTAGAATAACTTTCGAAGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCACTTGGATACACAATTGCAACTATACTTAAAAGAAGCAGCCACATATTCTCTGATGATAAGGTGTGTATAAAGATCGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCATGTTAAATACGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTACATTGAACAGATACAGCTAGAGAAGCTTGTTAATGATGTTATGGCCTTGCCAGATGATTTAAAAACCAAACTCAGCATAGACGATGAGTCACTTTCGAGTCCAAAGGAGGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGTGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTTAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAAATTTCTACCCTCAGTGAGAGAATGGATGAGTTCACAACTCGTATTGAAGAGCTGAACTCCAAGATATGTACCAGAAAAATGTCTGCTAGTCAGCAAAACTTGGTTTCACAATCGGATGCATGTAACAATGGCTCTGGAGCAACTTCAATTTTCATATCCGGCTTGAGCAACGGTGCCTTAACCGGATCGCTACTCCCTCATTCTTCATCGTCCTCCCAATTAGCCAAGGAATCTCCCTTGCTAGAAGAGATACAAAACATAGCACGAGCGCAACGTCAGATTATTCTCCAAGTTGACAATTTGAGCAATCTTCTCCGAGAGCACTCGAGCGAGAGGAGTCGCCGTGAAAAAACTGACGATGAAGGGAGGTGGAGGATTACTGATCTTGAATCAATCAGCACCCCAGTTTTGCTAACACTTGCAATTGGTAGTTTAGGTTTACTTTTGTTCAAGAGCATGAATATTCATAAATAA 1995 41.35 MAQDTSPSIESPRKRSGLLRDQVQLVKKKDSNRYEILPIQDPLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENINGLREGKSVQVPIYDFKTSSRVGYRIVEVPESRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSTKAVAVDQIKAVISENHNESTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDVPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDKVCIKIDWLEQLNRKYIQVQGKDRVHVKYVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKMSASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLAKESPLLEEIQNIARAQRQIILQVDNLSNLLREHSSERSRREKTDDEGRWRITDLESISTPVLLTLAIGSLGLLLFKSMNIHK* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1961757 1968368 - CsaV3_1G003160.1 Csa01g00316 514813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00316 664 SUPERFAMILY CYTH-like phosphatases 262 408 IPR033469 -
Csa01g00316 664 Gene3D - 67 277 IPR027417 -
Csa01g00316 664 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 652 - -
Csa01g00316 664 Coils Coil 501 528 - -
Csa01g00316 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 237 IPR027417 -
Csa01g00316 664 PANTHER URIDINE KINASE 7 652 - -
Csa01g00316 664 CDD UMPK_like 68 240 - -
Csa01g00316 664 Pfam CYTH domain 270 405 IPR023577 -
Csa01g00316 664 PRINTS Uridine kinase signature 66 83 - -
Csa01g00316 664 PRINTS Uridine kinase signature 133 148 - -
Csa01g00316 664 PRINTS Uridine kinase signature 189 199 - -
Csa01g00316 664 PRINTS Uridine kinase signature 225 238 - -
Csa01g00316 664 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Csa01g00316 664 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00316 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101210506 1245.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00316 Csa-Chr1:1961757 Csa05g02548 Csa-Chr5:26908752 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00316 Csa_Chr01 FPKM 8.275593 7.305766 14.632428 14.462469 18.924753 20.309494 18.695208 17.67272 19.266203 17.49609