Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00317 ATGGATTTGGAGGGACACCCATCTCTTCTTCACTTTCATATGCCCGCTGAGTGGGAACCCCATTCCCAATGTTGGTTGGGTTGGCCTGAACGGCCTGATAATTGGAGGGATAATGCAGTCCATGGACAACGAGTATTTGTTAAGGTGGCATCTGCAATCTCAAAGTTTGAACCTGTGACTGTCTGCGCTAGTGCCTCCCAGTGGGAGAATGCTCGCAGTCAGCTACCGGCAAATATTAGGGTCGTTGAGCTGGGAATGAATGACTCCTGGTTTCGCGATACTGGACCCACGTTTGTTGTAAGGAAAAGCATTTCAAATTCTGGTACGGCAGTGGAATCTGTTGCAGGAATTGATTGGACCTTCAATAGTTGGGGAGGTGCTGAGGATGGTTGTTACGCTGATTGGAGTCTTGATCTTCAAGTTGCAAGGAAGATCCTGGATATTGAGAGACTTCCTAGGTTTCCTAACACAATCATTCTTGAAGGTGGATCTATCCATGTAGATGGAGAAGGGACTTGTCTTACCACAGAGGAGTGTCTCTTGAATAAAAACAGAAATCCACATCTGTCAAAGGGTCAGATAGAGGATATTCTGAAGTCATATCTTGGGGTGAAGAAGATCATTTGGCTGCCTCGTGGACTATATGGCGATGATGATACAAATGGTCATATCGATAATATGTGTTGTTTTGCAAAGCCTGGAGTGGTTCTGTTATCTTGGACTGATGATCAAACAGATCCTCAGTATGAACGGTCTATAGAGGCATATTCTGTTCTCTCAGAAGTTACCGATGCAAAGGGTAGGAAATTGGACATAATAAAACTCCATGTGCCAGAGCCACTTTATTTGACAGATGAAGAGGCTTCAGGAATCGTTCAGGATGGTGATGCTAAGCCACGACCTCCGGGTATGAGACTGGCTGCCTCTTATGTAAACTTCTACATTGCTAATGGAGGAATTATTGCACCTCAATTTGGGGATCAAAAGTGGGATGATGAAGCAATCCGTGTACTAGCCGGAGCATTTCCAAATCATGAAATAGTTGGAATTGAAGGTGCTAGAGAGATCGTATTGGGAGGTGGAAATATACACTGCATTACTCAACAACAACCAGCAATAACCTCTTCACTTTCAAGACAAGTCTGA 1146 44.33 MDLEGHPSLLHFHMPAEWEPHSQCWLGWPERPDNWRDNAVHGQRVFVKVASAISKFEPVTVCASASQWENARSQLPANIRVVELGMNDSWFRDTGPTFVVRKSISNSGTAVESVAGIDWTFNSWGGAEDGCYADWSLDLQVARKILDIERLPRFPNTIILEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKGQIEDILKSYLGVKKIIWLPRGLYGDDDTNGHIDNMCCFAKPGVVLLSWTDDQTDPQYERSIEAYSVLSEVTDAKGRKLDIIKLHVPEPLYLTDEEASGIVQDGDAKPRPPGMRLAASYVNFYIANGGIIAPQFGDQKWDDEAIRVLAGAFPNHEIVGIEGAREIVLGGGNIHCITQQQPAITSSLSRQV* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1970502 1974453 + CsaV3_1G003170.1 Csa01g00317 514814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00317 381 Pfam Porphyromonas-type peptidyl-arginine deiminase 13 371 IPR007466 GO:0004668|GO:0009446
Csa01g00317 381 PANTHER AGMATINE DEIMINASE 2 374 - -
Csa01g00317 381 PANTHER AGMATINE DEIMINASE-RELATED 2 374 IPR007466 GO:0004668|GO:0009446
Csa01g00317 381 TIGRFAM agmatine_aguA: agmatine deiminase 10 372 IPR017754 GO:0009446|GO:0047632
Csa01g00317 381 SUPERFAMILY Pentein 4 372 - -
Csa01g00317 381 Hamap Agmatine deiminase [aguA]. 5 372 IPR017754 GO:0009446|GO:0047632
Csa01g00317 381 Gene3D - 3 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00317 K10536 aguA; agmatine deiminase [EC:3.5.3.12] - csv:101210752 795.423
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g404 . . . . . . . . . . . . . Car11g00217 Sed12g2040 . Cpe04g01433 Bhi02g00042 Tan09g1985 Cmetu02g1376 . Hepe09g0304 . . Cla06g01511 Cam06g1666 Cec06g1727 Cco06g1724 Clacu06g1632 Cmu06g1581 Cre06g2391 . . . Cone19ag0023 . . . . . . . . . . . . . . Cmo11g00242 . . . . . . . . . . . . . . . . . . . . . Csa01g00317 Chy02g02424 Cme02g01793
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010908 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00317 Csa_Chr01 FPKM 1.258592 1.224273 2.214891 3.150074 7.94698 9.478549 10.062673 1.517965 1.525983 1.83546