Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00328 ATGTGTAGGATTGTGAGGAATAAGTGGACATTGAAGAGTTCTATGGTGATGGGATTAAAGGCATTGGGAGAGAGCAAAATTGAGAAGATGAAGAGTTCAATGGTGTCTCCGAGGTCGAAGATGAAGCTGTGGATGATCCGTGCAATGACTTCTATTTTGCTTTGGACTTGCATCGTGCAGTTGACTGCCTTGGGAGAGACGTGGGGGCCAAGGGTTTTGAAGGGTTGGCCATCTTGTTTCACTCAAGAATCTGCATCCGTGGATGCGTTTGGTATCCCCAATAAACCTGTTCCAGTTCCCCCAAAAATAGTTCTTCCTCCTAAGAGGGTTTATAAGAACAATGGTTATCTGATGGTCTCTTGCAATGGAGGACTCAATCAAATGAGAGCTGCAATTTGTGACATGGTTACAATTGCAAGGTATTTGAATGTGACACTTATTGTACCTGAACTAGATAAAACTTCCTTTTGGGCTGACCCCAGTGAGTTCCAGGACATATTTGATGTTGAGCATTTTATTACATCATTGAGAGATGAAGTGCGCATATTGAAGGAGTTGCCTCCCAGGCTCAAAAAGAGAGTGGAACAGGGAAGGATTTATTCCATGCCACCAATTAGTTGGTCTGATATATCTTACTACCATAATCAGGTCCTTCCTCTTATTCAAAAACACAAAGTCGTGCATCTAAATAGAACTGATACTCGACTTGCCAACAATGGTCAACCTATGGAGATTCAGAAACTGCGCTGCCGGGTGAACTTTAGTGCTCTGAGGTTTACTTCCCAGATTGAGGAGTTGGGAAGAAAAGTTATAAAGCTCCTAAGGCAGAATGGTCCTGTTCTTGTTCTTCATCTCAGATATGAAATGGACATGTTAGCATTTTCTGGGTGCACTCAAGGTTGCAACGATGAAGAAGTTGAAGAGTTGACAAGAATGAGATATGCTTATCCCTGGTGGAAAGAAAAGGTAATAAATTCCGAGTTGAAGAGGAAAGATGGTTTGTGTCCGTTAACACCTGAGGAAACTGCACTTACTCTGAGGGCACTAGATATCGATCCTGATATCCAAATTTATATTGCTGCTGGAGAAATATACGGTGGCGACAGGAGAATGGCTGCACTTGCAAAGGCTTTTCCAAAATTGGTAAGAAAGGAGACTTTGTTGGAACCTTCAGAACTTAGTTTCTTCCAGAATCATTCATCTCAGATGTCAGCGTTAGATTATCTTGTTTCCTTGGAAAGTGATATATTTGTTCCTACATATGATGGAAACATGGCTAAAGTGGTTGAGGGTCACCGCAGATTTCTTGGGTTTAAGAAAACAATCTTATTGGACAGAAAGGTACTTGTAGATCTGATAGATCAATACAACAGAGAATTGCTAAACTGGGATGAATTCTCAACTGCAGTGAAAGAAGCGCATGCAAATCGCTGGGGAAGCCCTACCAAGAGATTAGTCATCCCAGACAAACCTAAAGAAGAAGATTATTTCTACTCCAACCCTGAAGAATGTCTGCAATTTTCAAATGAAGGATTGAGTAGTACATGA 1548 41.41 MCRIVRNKWTLKSSMVMGLKALGESKIEKMKSSMVSPRSKMKLWMIRAMTSILLWTCIVQLTALGETWGPRVLKGWPSCFTQESASVDAFGIPNKPVPVPPKIVLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVTIARYLNVTLIVPELDKTSFWADPSEFQDIFDVEHFITSLRDEVRILKELPPRLKKRVEQGRIYSMPPISWSDISYYHNQVLPLIQKHKVVHLNRTDTRLANNGQPMEIQKLRCRVNFSALRFTSQIEELGRKVIKLLRQNGPVLVLHLRYEMDMLAFSGCTQGCNDEEVEELTRMRYAYPWWKEKVINSELKRKDGLCPLTPEETALTLRALDIDPDIQIYIAAGEIYGGDRRMAALAKAFPKLVRKETLLEPSELSFFQNHSSQMSALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGFKKTILLDRKVLVDLIDQYNRELLNWDEFSTAVKEAHANRWGSPTKRLVIPDKPKEEDYFYSNPEECLQFSNEGLSST* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2034239 2038540 - CsaV3_1G003280.1 Csa01g00328 514825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00328 515 Pfam GDP-fucose protein O-fucosyltransferase 116 435 IPR019378 -
Csa01g00328 515 PANTHER GDP-FUCOSE O-FUCOSYLTRANSFERASE-LIKE PROTEIN 28 509 - -
Csa01g00328 515 CDD O-FucT_plant 116 441 IPR024709 -
Csa01g00328 515 PIRSF UCP009360 5 502 IPR024709 -
Csa01g00328 515 PANTHER OS02G0726500 PROTEIN-RELATED 28 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00328 K23280 RRT; rhamnogalacturonan I rhamnosyltransferase [EC:2.4.1.351] - csv:101212213 1034.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00627 Csa01g00328 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00328 Csa-Chr1:2034239 Csa04g01002 Csa-Chr4:7777324 0 dispersed
Csa05g02483 Csa-Chr5:26544252 Csa01g00328 Csa-Chr1:2034239 0 transposed
Csa01g00328 Csa-Chr1:2034239 Csa01g00627 Csa-Chr1:3998795 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g419 . . Bda06g00507 Bda15g00636 Bpe12g00511 . . Bma12g00956 Cmo13g01099 . Cma10g00278 Cma11g00232 Car10g00260 Car11g00208 . Cpe20g00093 Cpe04g01440 Bhi02g00051 . . . . . . Cla06g01519 Cam06g1676 Cec06g1737 Cco06g1733 Clacu06g1641 Cmu06g1589 Cre06g2400 . . Cone13ag0022 Cone19ag0031 Lsi02g00144 Csa01g00627 Chy12g01473 Cme12g01915 . Blo15g00346 . . . . . . . Cmo10g00295 Cmo11g00235 Cma13g01055 . Car13g00890 . . Cpe18g00722 Bhi08g01051 . . . . . . Cla04g01133 Cam04g1186 Cec01g1698 Cco01g1744 Clacu04g1213 Cmu04g1192 Cre01g1491 Lsi06g01385 Csa01g00328 Chy02g02414 Cme02g01801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000640 2 6 2 4 2 3 4 3 3 3 3 3 4 3 3 4 3 3 4 3 3 3 3 3 3 3 3 11 3 2 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00328 Csa_Chr01 FPKM 9.410959 9.602468 3.829178 4.113269 6.274972 6.567799 8.519562 4.09519 4.110333 5.151692