Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00330 ATGGATTTCTGGAACAAAGCTCGAAGTTTCGCAGAGGAAGCTGCGAAGCGCTCGCAGGAGCTAACTCTTGAAGCTGCGAGGCGTTCCCAAGAGCTCACCATCGGATCCTCTAGATTGTCTGATATCGTTTCTGAAACTGCTAAACGCTCCAAGGAATTCGCTACTGAGGCCTCCAAACGAGCTGATCAAATCAAAGCGGAAGCTGTTAAGCGAGCCGATCTCATCAAGCACTTGGTTGAGAGGACTCCGCCGTCTGGCGTCCTTGAGAAGAATGCTTCAGATGAAGAGACGCGGGAAGAGAATTTGCAGAGGTTTGGTATAAACGAAGAGCTGAGGGACTTCGTTAAAGGCATCACTATGAGTACATTTCGGGATTTTCCACTCGAAGATGATTCAGAAATGTCCAATGTCCCCACAGTCTCAAATATCAGTCAGGATCTAACTGAGTGGCAGGCGAAGCATGCAAGTCTTGTTCTTTTAACTGTCAAGGAAATTTCTAAGTTACGATATGAATTATGTCCACGCATTATGAAAGAGAGAAAATTCTGGAGGATTTACTTTTTACTGGTGAACAGACACATTACACCTTATGAGAAAAAGTACATGGAGGGCGTCATGCTGAAATCAGATAAACCAGTTGAAGATGGAATGATGGAACCTATTGAAGCTGAAATAACATCTGCATCAACTGGAATGATGGAACCTGTTAAAGCTGAAATAACATCTACATCTCAGGAGAAGAAAACTGCTCCAATCTCCTCATCAAGTGACCAAGACTTGGATGTATTTCTTCTCGGGGATCTTGGAGACAGTGATGAAGGTCCAGATGATGGAGATGACGGCTTTGATGACGATTTTGACAAAATGGTTGACACTTCGGATGACGAGAAAGACAAATAG 900 43.89 MDFWNKARSFAEEAAKRSQELTLEAARRSQELTIGSSRLSDIVSETAKRSKEFATEASKRADQIKAEAVKRADLIKHLVERTPPSGVLEKNASDEETREENLQRFGINEELRDFVKGITMSTFRDFPLEDDSEMSNVPTVSNISQDLTEWQAKHASLVLLTVKEISKLRYELCPRIMKERKFWRIYFLLVNRHITPYEKKYMEGVMLKSDKPVEDGMMEPIEAEITSASTGMMEPVKAEITSTSQEKKTAPISSSSDQDLDVFLLGDLGDSDEGPDDGDDGFDDDFDKMVDTSDDEKDK* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2048643 2053995 - CsaV3_1G003300.1 Csa01g00330 514827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00330 299 MobiDBLite consensus disorder prediction 239 260 - -
Csa01g00330 299 Pfam BSD domain 149 195 IPR005607 -
Csa01g00330 299 MobiDBLite consensus disorder prediction 239 299 - -
Csa01g00330 299 ProSiteProfiles BSD domain profile. 142 194 IPR005607 -
Csa01g00330 299 SMART wurzfinal6 142 194 IPR005607 -
Csa01g00330 299 PANTHER BSD DOMAIN PROTEIN 1 295 - -
Csa01g00330 299 SUPERFAMILY BSD domain-like 106 199 IPR035925 -
Csa01g00330 299 MobiDBLite consensus disorder prediction 270 291 - -
Csa01g00330 299 Gene3D BSD domain 119 203 IPR035925 -
Csa01g00330 299 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00330 - - - csv:101212458 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00330 Csa-Chr1:2048643 Csa05g02530 Csa-Chr5:26798244 1.07E-87 dispersed
Csa01g00330 Csa-Chr1:2048643 Csa06g03040 Csa-Chr6:26140382 1.84E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g420 . . . Bda15g00635 Bpe12g00513 . . . . . Cma10g00279 Cma11g00230 Car10g00262 Car11g00207 Sed08g0303 . Cpe04g01528 Bhi02g00053 Tan09g2002 Cmetu02g1950 . . . . Cla06g01625 Cam06g1806 Cec06g1857 Cco06g1863 Clacu06g1766 . Cre06g2528 . Cone16ag0242 . . . . . . . . . . . . . . . Cmo10g00296 Cmo11g00233 . . . . . Cpe18g00817 . . . . . . . . . . . . . . Lsi06g01506 Csa01g00330 Chy02g02413 Cme02g01923
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008148 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00330 Csa_Chr01 FPKM 5.777859 6.719527 18.033934 17.993235 24.228661 22.813055 25.097944 16.407448 15.142828 17.313972