Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00332 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGGTTGTTCGGCGGCGGGGGAGGCGGAGACCGTCGTTTACGGCCACATCTTCACCATCATCAAAACCACCAAGCTTTGAAGTGTCCAAGGTGTGATTCTCTTAATACCAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCATTTCTGCAAGAGTTGCCGTCGTTACTGGACCAAAGGTGGCGTCCTACGTAACGTCCCCGTCGGGGGTGGTTGCCGGAAAACCAAACGCTCTTCTTCTTCTAAATCTAAGTCTAACTCCTCCGACGCAGTGGCGACTCCTCCTCCACTACCTCCGCCTCCTCTTCCTCTTCCACTTCGTGATCGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCGAGTTTAACCGCAACAACTACGACCGCTGCGGCGGCGGCGGCAGCGGCAGCGACTGAGGCTGTGTCGGCTCCGTCGTCTAATTCGGCATCGGGTTTATTGAACGTACATGATACGAAATTGTTCACTGGTTCATCGACGACAAATACAAACCCTAATTTCGAAGTTCCGGACTGCGGGATTTTCTCGGAAATCGGAAGCTTCACCAGCTTGATCACATCGTCTAACGAGACATTAGCGTTTGGATTTGGTAATATGGCGGACGTGACGGCGTTTGCGATGAATAATCACCATCAGTTTCAAAATCAGACGGCGAACCAATGGCCCCCGCCGCCACCGCCGTCGCAGAGAATGATGAACGTTAACGATGAACTGAAGATGCAGGGTATGACGGACAGCAGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGGTATATGGATCAAACGGCTCAAGTGGATCCGAATAGCAGATCAAACAACATTGGATTTGGAGCGTTAGATTGGCAATCTAACGGTGATCATCAAGTCTTGTTTGATTTACCTACAGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAATGATCAAGACCAGCCGAATCTGTACCTTCCGTAA 1017 50.15 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPLRDRKSTSHSSSESSSLTATTTTAAAAAAAAATEAVSAPSSNSASGLLNVHDTKLFTGSSTTNTNPNFEVPDCGIFSEIGSFTSLITSSNETLAFGFGNMADVTAFAMNNHHQFQNQTANQWPPPPPPSQRMMNVNDELKMQGMTDSSGGGGGGGGGGYMDQTAQVDPNSRSNNIGFGALDWQSNGDHQVLFDLPTAVDQAYWSQNQWNDQDQPNLYLP* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2070673 2071689 + CsaV3_1G003320.1 Csa01g00332 514829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00332 338 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Csa01g00332 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 270 IPR045174 GO:0003700|GO:0006355
Csa01g00332 338 MobiDBLite consensus disorder prediction 263 291 - -
Csa01g00332 338 MobiDBLite consensus disorder prediction 1 26 - -
Csa01g00332 338 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Csa01g00332 338 MobiDBLite consensus disorder prediction 106 120 - -
Csa01g00332 338 MobiDBLite consensus disorder prediction 81 139 - -
Csa01g00332 338 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Csa01g00332 338 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 9 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00849 Csa01g00332 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00332 Csa-Chr1:2070673 Csa01g00849 Csa-Chr1:5317986 4.53E-35 dispersed
Csa01g00332 Csa-Chr1:2070673 Csa01g02399 Csa-Chr1:21290901 2.28E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30629 PF02701 zf-Dof 4.70E-33 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00332 - - csv:101212701 557.755