Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00335 ATGGAGGAGAGTGAGAGAGAAATTAGTATCAAAACCCTATCCGGACAATCATTGACCGTTTCCGTCTCCGGCAACAGCACAATTGATGACATCAAACTTCTACTCAGGCGGAATTTCCCCTCCGCAATCATTTCCCCCAATTTCCACCTATTTTTCAAGGGTACTAAATTGAAAGCACAGAGTCAAATTAGTGCGTGTTGCATTGACCATGGCGAATTTCTAGTTCTCATTCCATTTAATAAAAAGGAGTCTTCCAAGTCTCGGCTACGCGATCAATATGAACTAGAGTCCAGTGTTTCGAGCGGAACCTCAATTTCTCAATTCGCTGATTCTGCTTGGTCCGATATGGTGCAGGATTTATCGTATTTACATGGCTGTTCTGTTGAAGGGAGGGAGGCAACTGTCCCTGAGAGTGAGAGAGGGAGTTCTGAAGTCGGAGGTGTGGATGCTGAACTGGAAGCGTCTTGTAGTACTAGTTTTTTGAGTTCAAAAGCCAAAGGAAAAGTGGGTTTTGGTTATGATGGGTTGAATGGGAGTTTAGATGACGTTTTGAGGAACTTTTCGTTGTCTCCTACTGAGGGGTTTCTAAATGAACAAACCGGTGAAAGCTTTATTAAGTTTTTGGAATCGGTGGATTGTTTGACAGACCCACGTAATGGGAGTTGTATGTTGGCAAAACAAGCTAATTCACGAAGTGGTAACAAAAAAGCTCTAAATAGCACACGTGGTTCTTCATGTATATGTCCAATATGGTTGAAGAAGATAATGAAGGCATTTTCTTTCTTGAATGTTTTTTCTATGTTTCTTCAACTACAAGAGGAAATTATGACTGTAAGTCGATTGGAGCAAGCAACGGACCAGCTGCAGAAACGTAGACTTATGTTTTGTATGGAGGACATACATAACCTCTCTCGTCTATGTCCCAAGGCAGTACATTTTGCAAGTGGCAGATTGGAAGATACTCGTGTTGATAAGCTTATCATTATTATTTATTTGACTGAAAAAAATGGTCGACCAAAAGAGGACATTGACAATACTGTGTCAATGGATGTCAATCCACTGAAGAGACGGGAAAGATCCTTTAAACTTTATCTTTGGGAGGCTATTAAGTGCCATATGCTTAAACATGGAAGCGGAAGAGAGATGTGTGTGCCTTTTTCTTTGGAAGCTGTAATCACATCAAACGAGACAGATGTGGATGGAAGTGAAACAAAGCGAGCAAAGAAAAGTGATACGGCTTCTTCAAGTTCTCAATCAGACCGAATACGATGTCATGATACTTTAAAACTCTTGCCTGAGGATATGGTTGAACATCTTGGAAAGAGTGTTGGACCTGAGGGCCAGATTGTGCACATCAATGATATCTTGGCTAGGAAAGCTAATTATGTGGAAATTCCGAAGGAACTTTCAAATAGTGTTGTATCAGCACTCAAATGTATTGGTGTCGCAAAATTGTATAGCCATCAGGCACGGTCAATAGAAGCCTCCCTAGCTGGAAAGCATGTTGCTGTTGCGACAATGACGTCAAGTGGGAAATCTCTTTGCTATAACTTGCCAGTTCTTGAAGCAATGTCTCAAAATGTCTCATCGTGTGCTCTTTACTTATTTCCTACTAAGGCCTTAGCTCAAGATCAACTCAGAAGCTTGCTCGTCATGATGAAAGGATTTAATCATAACCTTAACATTGGGGTTTATGATGGGGATACATCACTGGCTGACAGGATATTATTGCGTGATAATGCTAGGCTGTTAATCACAAATCCAGATATGCTACATGTATCAATCCTGCCACACCACAGACAATTCGGTAGAATATTATCAAATCTTCGGTTTATAGTCATTGATGAGGCTCATACTTATAAGGGAGCATTTGGATGTCATACTGCATTAATACTACGGAGACTTCGTCGACTGTGCTCTCATGTGTATGGAAGTGATCCTTCCTTTATATTCTGCACAGCGACCTCTGCAAATCCCCGCGAACATTGTATGGAACTTGGAAATCTGTCAAGCTTAGAGCTGATTGACAACGATGGAAGTCCTTCTGCCAGAAAACTTTTCCTCCTCTGGAATCCTGTTATGGCCTTGAAAAGTTACCAGAGAGGTATTGATTCTCCTCAAAGTACAAAAAAGAACATTTCATTCAAAAATCCAAGCCCAATTATGGACATTGCAAGGCTCTTTGCGGAAATGGTTCAGCATGGACTTCGCTGCATTGCTTTCTGTAAAACTCGCAAACTTTGTGAGCTCGTTTTATGCTACACGCGTGAAATTCTTAAGGAGAGTGCACCTCATCTGGTTCAGTCTGTGTGTGCTTATCGTGCTGGATACACTGCTGAGGATAGGAGGAGAATTGAGAGTGACTTTTTTGGGGGAAACCTTTGTGGTGTTGCTGCTACGAATGCCCTTGAATTGGGTATTGATGTAGGCCATATTGATGCGACTCTGCATCTGGGTTTTCCTGGCAGTATTGCTAGCTTGTGGCAGCAAGCAGGCAGGGCAGGAAGGAGAGAAAAGACCTCTCTTTCTGTGTATGTGGCATTTGAAGGGCCTCTTGATCAATATTTCATGAAACACCCTGAAAAACTTTTTGGGAGCCCAATTGAGTGCTGCCACATTGATGCTGAAAACCAACAGGTTCTTGAACAGCATTTGTTATGTGCGGCATATGAACACCCAGTATGTCTGGCTTATGATCAGAAATTTTTTGGTCCTGGCTTAAACAATGCCCTAATGTCTCTGAAAAATAGAGGAGATTTGATTCCTGAGCCATCATGTGGTTCGTCCAAAAGTATATGGAACTATATTGGGCAAAAGAAAATGCCTTCCTGCTCAGTTAGTATCCGAGCCATTGAAGCAGAGAGATACAAAGTTGTAGACCAGCGTCGAAATGAAGTTCTCGAAGAGATTGAGGAAAGCAAGGCTTTCTTTCAGGTTTATGAAGGTGCTGTTTATATGCATCAAGGGAGAACTTATCTTGTCAAAAGCTTGAATTTGTCGACTATGCTTGCTTTCTGTGAAGAAGCTGATCTAAAATATTACACAAAAACACGCGATTACACCGACATTCATGTTATTGGTGGTAATTTGGCCTATCCTAGGAGGGCTCCAAATATTCCGCCCTCAAAGACAACTGCACAAGCAAATGATTGCAGAGTTACCACCACTTGGTTTGGCTTCTACCGAATACAAAAAGGAAGCAATCAAATTCTTGACTCAGTGGATCTCTCACTTCCAAAATATTCGTATAACTCTCAGGCAGTCTGGATTCCAGTACCACAATCAGTAAAAGAAGAGGTGAAAAGGAAAAACTTCAACTTTCGTGCAGGCTTGCATGGTGCTTCACATGCCCTTCTGAATGTCGTGCCATTACGCATTATATGCAACATGTCAGACTTGGCTCCTGAATGTGCAAATCCCCATGATACTCGCTATTTTCCAGAAAGAATTCTATTGTATGATCAGCATCCTGGAGGAACTGGTATGTCTCTGCAGATCCAGCCCGTTTTCATAGAGCTGTTGAATGCTGCTTTTGAACTTCTCACTTCTTGTCGCTGCTATGGAGAGACAGGCTGCCCTAATTGCGTCCAAAGTCTGGCCTGTCACGAATACAATGAGGTTTTACACAAGGATGCAGCCAGTTTAATTATCAAGGGTGTTCTGGATGCAGAGAAAGCATATTGCAGGTAA 3690 41.9 MEESEREISIKTLSGQSLTVSVSGNSTIDDIKLLLRRNFPSAIISPNFHLFFKGTKLKAQSQISACCIDHGEFLVLIPFNKKESSKSRLRDQYELESSVSSGTSISQFADSAWSDMVQDLSYLHGCSVEGREATVPESERGSSEVGGVDAELEASCSTSFLSSKAKGKVGFGYDGLNGSLDDVLRNFSLSPTEGFLNEQTGESFIKFLESVDCLTDPRNGSCMLAKQANSRSGNKKALNSTRGSSCICPIWLKKIMKAFSFLNVFSMFLQLQEEIMTVSRLEQATDQLQKRRLMFCMEDIHNLSRLCPKAVHFASGRLEDTRVDKLIIIIYLTEKNGRPKEDIDNTVSMDVNPLKRRERSFKLYLWEAIKCHMLKHGSGREMCVPFSLEAVITSNETDVDGSETKRAKKSDTASSSSQSDRIRCHDTLKLLPEDMVEHLGKSVGPEGQIVHINDILARKANYVEIPKELSNSVVSALKCIGVAKLYSHQARSIEASLAGKHVAVATMTSSGKSLCYNLPVLEAMSQNVSSCALYLFPTKALAQDQLRSLLVMMKGFNHNLNIGVYDGDTSLADRILLRDNARLLITNPDMLHVSILPHHRQFGRILSNLRFIVIDEAHTYKGAFGCHTALILRRLRRLCSHVYGSDPSFIFCTATSANPREHCMELGNLSSLELIDNDGSPSARKLFLLWNPVMALKSYQRGIDSPQSTKKNISFKNPSPIMDIARLFAEMVQHGLRCIAFCKTRKLCELVLCYTREILKESAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRAGRREKTSLSVYVAFEGPLDQYFMKHPEKLFGSPIECCHIDAENQQVLEQHLLCAAYEHPVCLAYDQKFFGPGLNNALMSLKNRGDLIPEPSCGSSKSIWNYIGQKKMPSCSVSIRAIEAERYKVVDQRRNEVLEEIEESKAFFQVYEGAVYMHQGRTYLVKSLNLSTMLAFCEEADLKYYTKTRDYTDIHVIGGNLAYPRRAPNIPPSKTTAQANDCRVTTTWFGFYRIQKGSNQILDSVDLSLPKYSYNSQAVWIPVPQSVKEEVKRKNFNFRAGLHGASHALLNVVPLRIICNMSDLAPECANPHDTRYFPERILLYDQHPGGTGMSLQIQPVFIELLNAAFELLTSCRCYGETGCPNCVQSLACHEYNEVLHKDAASLIIKGVLDAEKAYCR* 1230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2079545 2089782 + CsaV3_1G003350.1 Csa01g00335 514832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00335 1229 CDD SF2_C_Hrq 687 847 - -
Csa01g00335 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 857 IPR027417 -
Csa01g00335 1229 Gene3D - 455 671 IPR027417 -
Csa01g00335 1229 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 723 879 IPR001650 -
Csa01g00335 1229 SMART helicmild6 757 838 IPR001650 -
Csa01g00335 1229 Pfam DEAD/DEAH box helicase 487 657 IPR011545 GO:0003676|GO:0005524
Csa01g00335 1229 Coils Coil 271 291 - -
Csa01g00335 1229 SMART ultradead3 481 687 IPR014001 -
Csa01g00335 1229 ProSiteProfiles Ubiquitin domain profile. 6 77 IPR000626 GO:0005515
Csa01g00335 1229 Gene3D - 7 94 - -
Csa01g00335 1229 PANTHER ATP-DEPENDENT HELICASE HRQ1 19 1228 - -
Csa01g00335 1229 Gene3D - 711 884 IPR027417 -
Csa01g00335 1229 SUPERFAMILY Ubiquitin-like 3 77 IPR029071 -
Csa01g00335 1229 MobiDBLite consensus disorder prediction 397 421 - -
Csa01g00335 1229 Pfam MrfA Zn-binding domain 1114 1196 IPR018973 -
Csa01g00335 1229 CDD Ubl_ubiquitin_like 8 77 - -
Csa01g00335 1229 Pfam Helicase conserved C-terminal domain 728 837 IPR001650 -
Csa01g00335 1229 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 674 IPR014001 -
Csa01g00335 1229 CDD DEXHc_Hrq1-like 485 666 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00335 - - - csv:101220817 2448.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00335 Csa-Chr1:2079545 Csa02g00483 Csa-Chr2:3424608 5.62E-09 dispersed
Csa01g00335 Csa-Chr1:2079545 Csa01g00641 Csa-Chr1:4089424 1.08E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00335 Csa_Chr01 FPKM 20.673929 23.11648 20.933725 20.687099 21.472618 20.028017 19.579733 15.175589 13.328601 13.08845