Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00337 ATGGCTAGGAAACACACCCGATTGCAGAGGGTGAGAATTTCTCAACCCTCTGGTTGTTTTCAGGTATGTTTCCGGCAAATTCGAACCAGACCCACCGTCGATTCGATTCAGAATTTTCAGAGGGAGGAACTTTTAGGGGATGGGTATTGCGCGGGAAGTGTGAAATCTGTGGATCAGATTGGTAATAGAATAATGGTTGTGGTTGATTCTAGTTTTGAGGGTAAAGGAGCTCTTGAATGGGCTTTGTCTCATGCTGTTCAGTCTCATGATTCTATTATTCTTCTTCACGTTTCTAAATCTTCAAAACAAGGCGTTGTGTTTGATGAAAAGCTTGACATGAAGGCTTATCAGCTTCTTCTGTCTTTGAAGAATATGTGTCAAATGAGAAGGCCAGGAGTTCAAGTGGAGATGGAATTCCTACAGGGGAAGGAGATGGGTCGTGTGATCGTCGAAGAAGCCAAGAAACAGCGAGTGTCTCTGTTGGTTCTTGGGCAAAGGAAGCAATCTCCATTCCGGTCACTGATAAAGAAGTTCAGTACAAACAAGAGAAGGAATCATGGAGGGATTGTGGAGTACTGCATCCAAACATCTTCATGCCTAACCATTGCGGTGAGGAGGAAAAGCAAGAAAGTAGGAGGATATTTGATCACGACAAAAAGTCACAAGAATTTCTGGCTTTTGGCTTGA 687 43.38 MARKHTRLQRVRISQPSGCFQVCFRQIRTRPTVDSIQNFQREELLGDGYCAGSVKSVDQIGNRIMVVVDSSFEGKGALEWALSHAVQSHDSIILLHVSKSSKQGVVFDEKLDMKAYQLLLSLKNMCQMRRPGVQVEMEFLQGKEMGRVIVEEAKKQRVSLLVLGQRKQSPFRSLIKKFSTNKRRNHGGIVEYCIQTSSCLTIAVRRKSKKVGGYLITTKSHKNFWLLA* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2100296 2102313 - CsaV3_1G003370.1 Csa01g00337 514834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00337 228 CDD USP_Like 63 204 - -
Csa01g00337 228 Pfam Universal stress protein family 63 205 IPR006016 -
Csa01g00337 228 Gene3D HUPs 61 213 IPR014729 -
Csa01g00337 228 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 228 - -
Csa01g00337 228 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00337 - - - csv:101221050 452.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00623 Csa01g00337 CCT
Csa01g00337 Csa01g00623 ECH
Csa01g00623 Csa01g00337 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00337 Csa-Chr1:2100296 Csa05g02523 Csa-Chr5:26770880 1.03E-53 dispersed
Csa02g01260 Csa-Chr2:12328771 Csa01g00337 Csa-Chr1:2100296 1.74E-07 transposed
Csa01g00337 Csa-Chr1:2100296 Csa01g00646 Csa-Chr1:4108157 4.50E-07 wgd
Csa01g00337 Csa-Chr1:2100296 Csa01g00623 Csa-Chr1:3985747 1.87E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g436 . . . . . Bpe13g00318 . . Cmo13g01102 . . Cma11g00224 . Car11g00200 Sed08g2163 Cpe20g00090 . Bhi02g00072 Tan09g2012 Cmetu02g0670 . Hepe09g0289 . . Cla06g01526 Cam06g1683 Cec06g1745 Cco06g1743 Clacu06g1650 Cmu06g1597 Cre06g2408 . . . . Lsi02g00139 Csa01g00623 Chy12g01478 Cme12g01919 . . Bda11g01768 Bda14g00892 . Bpe15g00566 Bma03g00868 . Sed01g2281 . Cmo11g00227 Cma13g01058 . Car13g00893 . . . Bhi08g01057 Tan05g2333 Cmetu12g1433 Lac10g0185 Hepe07g2443 . . . . . . . . . Lsi06g01395 Csa01g00337 Chy02g02405 Cme02g01809
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002926 2 2 1 3 2 2 2 2 2 2 1 2 1 2 2 2 2 0 1 2 2 2 2 2 1 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00337 Csa_Chr01 FPKM 2.638861 3.310479 7.056217 6.546362 10.45173 9.804608 9.596372 15.226483 14.103065 16.312468