Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00339 ATGGCGGATACCAACTCCACTCCCATTCTCAAAGATGACCTCGATATCGTCATCCCCACCATCCGTAACCTCGACTTCCTTGAAATGTGGAGGCCATTTTTTCAGCCATATCATTTGATCATTGTCCAAGACGGCGATCCTTCCAAAACTATCAGAGTTCCTGATGGCTTTGATTATGAACTTTATAATCGTAACGATATCAATCGGATTCTGGGTTCTAAGGCCTCTTGCATTTCCTTTAAGGACTCTGCTTGTAGGTGCTTTGGGTACTTGATCTCCAAGAAGAAGTATATCTTCACAATTGATGATGACTGCTTTGTTGCTAAAGATCCATCTGGTAAAGAGATTAATGCACTTGAACAGCACATTAAGAACATCTTGACGCCATCAACCCCATTTTTCTTCAACACCCTTTATGATCCATATAGAGAAGGTGCTGATTTTGTCCGTGGATATCCATTTTCTCTCCGGGAAGGTGTTCCCACTGCAGTATCTCATGGGCTTTGGTTAAACATTCCAGATTATGATGCACCCACCCAACTCGTCAAACCAATGGAGAGAAACACAAGGTACGTTGACGCAGTTCTGACGGTACCAAAGGCCACCCTCTTTCCAATGTGTGGAATGAATCTTGCATTCAACCGTGATTTGATCGGTCCTGCCATGTACTTTGGACTCATGGGAGATGGCCAACCCATTGGTCGCTATGATGATATGTGGGCTGGTTGGTGTATGAAGGTCATTTGTGACCACTTGGGATTTGGAGTGAAGACAGGGTTGCCATATATCTGGCACAGCAAGGCAAGCAACCCATTTACAAACCTCAGAAAGGAATACAAAGGAATCTTTTGGCAAGAACAAATCGTACCATTTTTTCAAACTGTTACGCTACCAAAGGATTGCAACACTGTGCAGAAGTGCTATATTGAACTCTCCAAGCTGGTGAGGGAAAAACTCAGTTCGGTTGATGAGTATTTCATTAAACTTGCAGATGCCATGCTCACTTGGATTGAAGCTTGGGACGAGCTAAATCCATCCGAGGAAGCAACTGAACTACCCAAATTTGTTTCAAAATAA 1077 43.27 MADTNSTPILKDDLDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKTIRVPDGFDYELYNRNDINRILGSKASCISFKDSACRCFGYLISKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNILTPSTPFFFNTLYDPYREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPMERNTRYVDAVLTVPKATLFPMCGMNLAFNRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHLGFGVKTGLPYIWHSKASNPFTNLRKEYKGIFWQEQIVPFFQTVTLPKDCNTVQKCYIELSKLVREKLSSVDEYFIKLADAMLTWIEAWDELNPSEEATELPKFVSK* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2121775 2128426 - CsaV3_1G003390.1 Csa01g00339 514836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00339 358 PANTHER UDP-ARABINOSE MUTASE 4 350 IPR037595 -
Csa01g00339 358 Pfam Reversibly glycosylated polypeptide 10 344 IPR037595 -
Csa01g00339 358 PANTHER UDP-ARABINOPYRANOSE MUTASE 3 4 350 - -
Csa01g00339 358 SUPERFAMILY Nucleotide-diphospho-sugar transferases 17 246 IPR029044 -
Csa01g00339 358 PIRSF UPTG 4 348 IPR004901 GO:0016866|GO:0071669
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00339 K13379 RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] - csv:101221524 754.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00339 Csa-Chr1:2121775 Csa01g00617 Csa-Chr1:3945618 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g442 Blo04g00799 . . . . . . . Cmo13g01106 . Cma10g00287 . Car10g00269 . Sed12g2021 Cpe20g00087 . Bhi02g00076 Tan09g2021 Cmetu02g2065 . Hepe09g0287 . . Cla06g01529 Cam06g1686 Cec06g1748 Cco06g1746 Clacu06g1653 Cmu06g1600 Cre06g2411 . . . . Lsi02g00136 . Chy12g01482 Cme12g01923 . . . Bda14g00889 . Bpe15g00570 . . Sed08g2133 Cmo10g00305 . Cma13g01061 . Car13g00897 . . Cpe18g00715 Bhi08g01066 Tan05g2341 Cmetu12g1637 Lac10g0180 Hepe07g2447 . . Cla04g01142 Cam04g1195 Cec01g1707 Cco01g1752 Clacu04g1221 Cmu04g1200 Cre01g1499 Lsi06g01399 Csa01g00339 Chy02g02403 Cme02g01811
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000316 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4 4 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00339 Csa_Chr01 FPKM 6.986381 8.527038 10.336119 11.242368 8.244687 8.285082 10.481883 12.049353 10.325624 10.673409