Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00340 ATGGAAGTAAATACCTATATTCATTCATTACACAAAATTCTCTTTCAATGGGAATGTTACTCGCCTCGACAGCAAAAAATTGCACTCTTAGCACTTCTGATCTTTACTGCTTTCTATTCAACTGGGGCTTACGATCCGTTGGATCCAAATGGGAACATAACAATCAAATGGGATGTAGTCTCTTGGACGCCAGATGGATACGTTGCTGTGGTGACAATGAACAACTTTCAGATGTACCGACATATCAATTCACCAGGATGGACTCTAGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCAATGGTAGGAGCTCAGACAACAGAACAAGGAGATTGTTCCAAGTTCAAAGGAAATGTCCCTCACTGTTGCAAGAAAACCCCAATAGTTGTTGATTTGCTCCCTGGTGTTCCTTACAATCAACAATTCTCCAATTGCTGCAAAGGTGGAGTATTGGCATCCTGGGGACAGGATCCAACAAGTTCTGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCAGGCACATCAAACAAAACTGTAAAGTTGCCAAAAAACTTCACACTGCTCGGTCCAGGACCAGGATACACATGTGGACCTGCAAAGGTTGTGCCTTCTACTGTCTTCCTTACTCCTGATCGTCGGCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTACTCACAATTTCTGGCCTCTAAGAACCCAACTTGCTGCGTATCACTCTCCACTTTCTACAATGATACGATCACTTCTTGCCCAACGTGTGCATGTGGCTGTCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTATTGCACAAGGAAGGAATAAACACTCCCAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCAGTTAGAGTACACTGGCACGTAAAGATTAATTACAAGGATTACTGGCGTGTGAAGGTTGCTGTAACTAACTTCAACTATAGAATGAACTACACACTGTGGACACTGGCAGTGCAGCATCCAAATCTAAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGACACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAACGTACAATCTGAAGTACTCATGAAGAAGGACAAGGATACCTTTAGCTTCAAGCAGGGTTGGGCCTTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAGATGCCACCACCAGAATCGTATCCATTTCTTCCAAACTCTTCGCCTGTAGGATATGGTCCAGTAACCAAATTTACCACCTCCTTGTTGATTTTGATACTCTGGTTCATGTGGTGA 1374 42.79 MEVNTYIHSLHKILFQWECYSPRQQKIALLALLIFTAFYSTGAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMNNFQMYRHINSPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPIVVDLLPGVPYNQQFSNCCKGGVLASWGQDPTSSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKEGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFSFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSSPVGYGPVTKFTTSLLILILWFMW* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2128397 2130907 + CsaV3_1G003400.1 Csa01g00340 514837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00340 457 PANTHER PROTEIN COBRA 28 452 IPR006918 GO:0010215|GO:0031225
Csa01g00340 457 PIRSF COBRA 18 457 IPR006918 GO:0010215|GO:0031225
Csa01g00340 457 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215|GO:0031225
Csa01g00340 457 PANTHER COBRA-LIKE PROTEIN 28 452 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00618 Csa01g00340 CCT
Csa01g00618 Csa01g00340 ECH
Csa01g00340 Csa01g00618 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00340 Csa-Chr1:2128397 Csa04g01017 Csa-Chr4:7962730 0 dispersed
Csa01g00340 Csa-Chr1:2128397 Csa01g00341 Csa-Chr1:2130722 0 tandem
Csa03g02318 Csa-Chr3:20725839 Csa01g00340 Csa-Chr1:2128397 5.06E-38 transposed
Csa07g00077 Csa-Chr7:752506 Csa01g00340 Csa-Chr1:2128397 6.17E-105 transposed
Csa01g00340 Csa-Chr1:2128397 Csa01g00618 Csa-Chr1:3946497 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00340 - - csv:101221756 981.474